Data_Engineering / OAISIS_clean /config_format.json
maxmo2009's picture
Initial upload: data cleanup pipeline for 12 medical imaging datasets
da9fb1e verified
{
"Modality": {
"type": "option",
"required": true,
"options": [
"CT",
"MRI",
"T1",
"T2",
"X-ray",
"Fluoroscopy",
"US",
"PET"
]
},
"OriImg_path": {
"type": "string",
"required": true
},
"Label_path": {
"type": "dict",
"required": false,
"keys": [
"classification",
"segmentation",
"regression",
"detection",
"localization",
"registration",
"other"
],
"value": {
"type": "dict",
"required": false,
"keys": [
"lung",
"liver",
"heart",
"brain",
"kidney"
],
"value": {
"type": "string",
"required": false
}
}
},
"ROI": {
"type": "option",
"required": false,
"options": [
"chest-abdomen",
"abdomen-pelvis",
"head",
"neck",
"skeleton",
"chest",
"abdomen",
"shoulder",
"leg",
"arm",
"hand",
"foot",
"pelvis"
]
},
"Label_tissue": {
"type": "list",
"required": false,
"items": {
"type": "option",
"required": true,
"options": [
"lung",
"liver",
"heart",
"brain",
"kidney",
"spleen",
"pancreas",
"stomach",
"intestine",
"muscle",
"bone"
]
}
},
"Task": {
"type": "list",
"required": false,
"items": {
"type": "option",
"required": true,
"options": [
"classification",
"segmentation"
]
}
},
"Spacing_mm": {
"type": "float",
"required": true
},
"Size": {
"type": "list",
"required": true,
"items": {
"type": "int",
"required": true
}
},
"Dataset_name": {
"type": "string",
"required": true
},
"Sub_modality": {
"type": "dict",
"required": false
},
"Label_Dict": {
"type": "dict",
"required": false
}
}