rem stringlengths 1 226k | add stringlengths 0 227k | context stringlengths 6 326k | meta stringlengths 143 403 | input_ids listlengths 256 256 | attention_mask listlengths 256 256 | labels listlengths 128 128 |
|---|---|---|---|---|---|---|
public static void commitChanges(final Project project, final Collection<Change> changes) { commitChanges(project, changes, null); | public static void commitChanges(final Project project, final Collection<Change> changes, final CommitExecutor executor) { final ChangeListManager manager = ChangeListManager.getInstance(project); if (changes.isEmpty()) { Messages.showWarningDialog(project, VcsBundle.message("commit.dialog.no.changes.detected.text") ,... | public static void commitChanges(final Project project, final Collection<Change> changes) { commitChanges(project, changes, null); } | 17306 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17306/262baea8f6c4d7c153f7904014536479c22bb43b/CommitChangeListDialog.java/buggy/source/com/intellij/openapi/vcs/changes/ui/CommitChangeListDialog.java | [
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return c.counts[countIndex+insIndex] + c.counts[countIndex+delIndex] + | return c.counts[countIndex+indelIndex] + | public double alignmentLength() { Counts c = get_counts(); return c.counts[countIndex+insIndex] + c.counts[countIndex+delIndex] + c.counts[countIndex+diagIndex]; } | 10011 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10011/52afec7c07a8a9b55caaa9bf3a621ed0a3712739/Mutation_1State.java/clean/common/Mutation_1State.java | [
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result[0] = (Task) SerializationUtils.fromByteArray(SerializationUtils.toByteArray(task)); | result1[0] = SerializationUtils.toByteArray(task); | private Task cloneAliasedTask(final Task task) { final Task[] result = new Task[1]; ClusterContextTable.withClusterContext(task.getDestination(), new Runnable() { public void run() { try { result[0] = (Task) SerializationUtils.fromByteArray(SerializationUtils.toByteArray(task)); ... | 10687 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10687/4d8db8bf51081f7d809998ebe231b7d1155ff7a6/ReceiveTaskLP.java/clean/planning/src/org/cougaar/planning/ldm/lps/ReceiveTaskLP.java | [
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private void registerServices() { // Get root service broker nodeControlService = (NodeControlService) serviceBroker.getService(this, NodeControlService.class, null); if (nodeControlService != null) { rootServiceBroker = nodeControlService.getRootServiceBroker(); if (rootServiceBroker == null)... | 12869 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12869/62bd363f955b68d03456231b246aae08d58186aa/SecurityServiceProvider.java/clean/securityservices/src/org/cougaar/core/security/provider/SecurityServiceProvider.java | [
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public Image getImage( String uri ) | public Image getImage( String uri, boolean refresh ) | public Image getImage( String uri ) { return getImage( uri, false ); } | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/0bf618fe559b62ad991e6e2ec8175f3947bdc207/ImageManager.java/buggy/UI/org.eclipse.birt.report.designer.core/src/org/eclipse/birt/report/designer/util/ImageManager.java | [
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else if ( LA25_0==EOL||LA25_0==22||(LA25_0>=29 && LA25_0<=31)||(LA25_0>=33 && LA25_0<=38) ) { | else if ( LA25_0==EOL||LA25_0==15||LA25_0==22||LA25_0==27||(LA25_0>=29 && LA25_0<=31)||(LA25_0>=33 && LA25_0<=38) ) { | public void rule_attributes(RuleDescr rule) throws RecognitionException { AttributeDescr a = null; try { // C:\Projects\jboss-rules\drools-compiler\src\main\resources\org\drools\lang\drl.g:257:25: ( ( 'attributes' )? ( ':' )? opt_eol ( ( ',' )? a= rule_attribute opt_eol )* ) /... | 5490 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5490/9c6423b7a31fdc4a1317e71a6d2850c94e2140e0/RuleParser.java/buggy/drools-compiler/src/main/java/org/drools/lang/RuleParser.java | [
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strTreeSet = ""; | private void refreshEntities() { lisEntities.removeAll(); int listIndex = 0; String strTreeSet = ""; String strTreeView = ""; boolean localUnits = false; entityCorrespondance = new int[client.game.getNoOfEntities()]; for (Enumeration i = client.getEntities(); i.hasMo... | 3464 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3464/c12bd6e4c1e55b992ee14a51b1bb03990f54e499/ChatLounge.java/clean/megamek/src/megamek/client/ui/AWT/ChatLounge.java | [
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runQueryCheckResult( | assertQueryReturns( | public void _testYtdGrowth() { runQueryCheckResult( // todo: implement "ParallelPeriod" "WITH MEMBER [Measures].[YTD Unit Sales] AS" + nl + " 'COALESCEEMPTY(SUM(YTD(), [Measures].[Unit Sales]), 0)'" + nl + "MEMBER [Measures].[Previous YTD Unit Sales] AS" + nl + ... | 4891 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4891/3041f930b5fc4bf6aa3339845b828801c1d8b366/BasicQueryTest.java/buggy/testsrc/main/mondrian/test/BasicQueryTest.java | [
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StringUtils.printException(t); | StringUtil.printException(t); | public static void main(String[] args) { try { String options[] = { "config:", "help", "timeout:", "version" }; Options opt = Options.parse(args, options); if (opt.isSet("help")) { ... | 51310 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51310/1f50ffb219183ddaf94720a4aba453e11f412425/NetGtp.java/buggy/src/net/sf/gogui/netgtp/NetGtp.java | [
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public static ShapePainter convertMarkers(Element paintedElement, | public static ShapePainter convertMarkers(Element e, | public static ShapePainter convertMarkers(Element paintedElement, ShapeNode node, BridgeContext ctx) { CSSOMReadOnlyStyleDeclaration decl = CSSUtilities.getComputedStyle(paintedElement); CSSValue v; ... | 46680 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46680/73c18fe9666e3e12716d10fc9afa64073db4c647/PaintServer.java/clean/sources/org/apache/batik/bridge/PaintServer.java | [
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} else { Logger.minor(this, "delay="+delay+"("+throttle+") sleep for "+(sleepUntil-now)+" for "+this); if(sleepUntil - now > 0) try { synchronized(this) { wait(Math.min(sleepUntil - now, 500)); } } catch (InterruptedException e) { } | public void run() { long sentRequestTime = System.currentTimeMillis(); while(true) { RequestStarterClient client; client = getNextClient(); Logger.minor(this, "getNextClient() = "+client); if(client != null) { boolean success; try { success = client.send(cycleNumber); } catch (Throwable t) { ... | 56348 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56348/d32229c02576d531c915059f111c468591f30e84/RequestStarter.java/clean/src/freenet/node/RequestStarter.java | [
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protected void initFile(String id) throws FormatException, IOException { super.initFile(id); in = new RandomAccessStream(id); in.skipBytes(4); little = in.read() == 0x49; bpp = 2; // this is a major assumption // check if there are multiple "series" - note that each series has the // same dimensi... | 46826 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46826/3dfd59718bd357815b599f69b2fb792dc8c85b62/SlidebookReader.java/buggy/loci/formats/in/SlidebookReader.java | [
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match(LITERAL_collection); if ( inputState.guessing==0 ) { name= "collection"; } reservedKeywords_AST = (AST)currentAST.root; break; } case LITERAL_ancestor: | match(LITERAL_parent); if ( inputState.guessing==0 ) { name= "parent"; } reservedKeywords_AST = (AST)currentAST.root; break; } case LITERAL_self: | public final String reservedKeywords() throws RecognitionException, TokenStreamException { String name; returnAST = null; ASTPair currentAST = new ASTPair(); AST reservedKeywords_AST = null; name= null; switch ( LA(1)) { case LITERAL_div: { AST tmp288_AST = null; tmp288_AST = astFactory.create(LT(1));... | 2909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2909/ca3671ce7c752480b17278b434be7f75e3ec7d57/XPathParser2.java/buggy/src/org/exist/parser/XPathParser2.java | [
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if (RefactoringMessageUtil.checkReadOnlyStatusRecursively(myProject, elements[i])) return; | if (!RefactoringMessageUtil.checkReadOnlyStatusRecursively(myProject, elements[i])) return; | public void performCut(DataContext dataContext) { PsiElement[] elements = getValidSelectedElements(); if (elements == null) { return; } for (int i = 0; i < elements.length; i++) { if (RefactoringMessageUtil.checkReadOnlyStatusRecursively(myProject, elements[i])) retur... | 56627 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56627/41d43413463e0d47889b1ef52743fbc607d28ecd/CopyPasteManagerEx.java/buggy/source/com/intellij/ide/CopyPasteManagerEx.java | [
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public void calculateChecksum(Patch ip, int start, int end, int ofs) { | protected void calculateChecksum(Patch ip, int start, int end, int ofs) { | public void calculateChecksum(Patch ip, int start, int end, int ofs) { Patch p = (Patch)ip; int sum = 0; for (int i = start; i <= end; i++) { sum += p.sysex[i]; } sum += 0xA5; p.sysex[ofs] = (byte) (sum % 128); // p.sysex[ofs]=(byte)(p.sysex[ofs]^127); // p.sysex[ofs]=(byte)(p.sysex[ofs]+1); } | 7591 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7591/af6640fd9aa925c4d7044770be761a3432d7c66e/KawaiK4SingleDriver.java/clean/JSynthLib/synthdrivers/KawaiK4/KawaiK4SingleDriver.java | [
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} else if (this == runtime.getFalse()) { | } else if (this == getRuntime().getFalse()) { | public IRubyObject method_missing(IRubyObject[] args) { if (args.length == 0) { throw new ArgumentError(getRuntime(), "no id given"); } String name = args[0].asSymbol(); String description = callMethod("inspect").toString(); boolean noClass = description.charAt(0) == '#... | 48072 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48072/870e1da9b41bfdbae259e1fc5f18fc8b76686998/RubyObject.java/buggy/src/org/jruby/RubyObject.java | [
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updateHighlighters(null, new LinkedHashSet<HighlightingPass>(Arrays.asList(new WolfPass(myProject))), null); | updateHighlighters(null, Collections.singleton(new WolfPass(myProject)), null); | public void run() { updateHighlighters(null, new LinkedHashSet<HighlightingPass>(Arrays.asList(new WolfPass(myProject))), null); } | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/8e8b4eda7ff16f591891952013bc6902d411040a/DaemonCodeAnalyzerImpl.java/clean/codeInsight/impl/com/intellij/codeInsight/daemon/impl/DaemonCodeAnalyzerImpl.java | [
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if (clade.attributeLists == null) { clade.attributeLists = new List[attributeNames.length]; | if (attributeNames != null) { if (clade.attributeLists == null) { clade.attributeLists = new List[attributeNames.length]; for (int i = 0; i < attributeNames.length; i++) { clade.attributeLists[i] = new ArrayList(); } } clade.attributeLists[0].add(new Double(tree.getNodeHeight(node))); | private void addClade(BitSet bits, Tree tree, NodeRef node) { Clade clade = (Clade)cladeMap.get(bits); if (clade == null) { return; } clade.setFrequency(clade.getFrequency() + 1); if (clade.attributeLists == null) { clade.attri... | 49053 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49053/8d1ce22038f82eb637f83e7b14f5d3fc51eafb53/TreeAnnotator.java/buggy/trunk/src/dr/app/tools/TreeAnnotator.java | [
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btParser.setSym1(nf.Binary(pos(), a, Binary.LE, b)); break; } case 384: { Expr a = (Expr) btParser.getSym(1), b = (Expr) btParser.getSym(4); btParser.setSym1(nf.Binary(pos(), a, Binary.GE, b)); break; } case 385: break; case 386: { | btParser.setSym1(nf.Binary(pos(), a, Binary.NE, b)); break; } case 384: break; case 385: { | public void ruleAction(int ruleNumber) { if (bad_rule != 0) return; switch (ruleNumber) { // // Rule 1: identifier ::= IDENTIFIER // case 1: { if (prsStream.getKind(btParser.getToken(1)) != X10Parsersym.TK_IDENTIFIER) ... | 1769 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1769/bb2a94143f433b1bc3a3f14e9063a6f9ed4a0262/X10Parser.java/clean/x10.compiler/src/x10/parser/X10Parser.java | [
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public final String externalizedMessage( String sChartKey ) { // The key can be either alone, or with its default value: "key=defaultvalue" /* Possible cases: chartkey lookup badkey nolookup ------------------------------------- a=b get(a) b b b get(b) b b =b b - b */ String sKey = sChartKe... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/536b54a46b25aa99e427a2fbd8217e09108c905a/RunTimeContext.java/clean/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/factory/RunTimeContext.java | [
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.add(jPanel5Layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE) .add(headerOneLabel) .add(headerOneField, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE)) .addPreferredGap(org.jdesktop.layout.LayoutStyle.RELAT... | .add(jPanel6, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE) .addContainerGap(160, Short.MAX_VALUE)) ); jTabbedPane1.addTab(L10n.getString("Settings.SchedaTab"), jPanel5); | private void initComponents() { languagesButtonGroup = new javax.swing.ButtonGroup(); jTabbedPane1 = new javax.swing.JTabbedPane(); jPanel1 = new javax.swing.JPanel(); jPanel2 = new javax.swing.JPanel(); englishRadioButton = new javax.swing.JRadioButton(); czechRadioButton ... | 57211 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57211/eaafb6874ea900a9290f803ef2c0f42fe83af3ce/SettingsView.java/buggy/trunk/src/net/sf/plantlore/client/SettingsView.java | [
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if (title != null) { | if (title != null && title.length() > 0) { | public byte[] toPDF() { ByteArrayOutputStream bout = new ByteArrayOutputStream(128); try { bout.write(encode(getObjectID())); bout.write(encode("<<\n")); if (title != null) { bout.write(encode("/Title ")); bout.write(encodeText(this.title)... | 5268 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5268/cbc3059c396fb572727bcb6afbdd70b8967107f1/PDFInfo.java/clean/src/java/org/apache/fop/pdf/PDFInfo.java | [
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tradable_specification.set_main_data(main_dataset); | tradable_specification.set_data(main_dataset); | public void send_data_request(String tradable) { DrawableDataSet dataset, main_dataset; MA_Configuration conf = MA_Configuration.application_instance(); turn_off_refresh(); // Prevent auto-refresh conflicts. int count; String current_indicator; try { if (period_type_change || ! tradable.equals(current_tradable(... | 13245 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13245/48515131c4aa58427e291bfe1c546162f299a1d4/Chart.java/clean/src/clients/mas_gui/Chart.java | [
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public INode newline_node(INode node, ISourcePosition iPosition) { if (node != null) { return new NewlineNode(iPosition, node); } else { return null; } | public INode newline_node(INode node, ISourcePosition position) { return node == null ? null : new NewlineNode(position, node); | public INode newline_node(INode node, ISourcePosition iPosition) { if (node != null) { return new NewlineNode(iPosition, node); } else { return null; } } | 46454 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46454/f5c9a1ebd775712f2dc086acfce1a14a123ec632/ParserSupport.java/clean/src/org/jruby/parser/ParserSupport.java | [
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else if ((_tokenSet_0.member(LA(1)))) { | else if ((_tokenSet_1.member(LA(1)))) { | public final void stepExpr() throws RecognitionException, TokenStreamException { returnAST = null; ASTPair currentAST = new ASTPair(); AST stepExpr_AST = null; boolean synPredMatched39 = false; if (((_tokenSet_0.member(LA(1))))) { int _m39 = mark(); synPredMatched39 = true; inputState.guessing++; try ... | 2909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2909/ad9d55f515de2cb1fa50cf09c9e42150efc8374f/XPathParser2.java/buggy/src/org/exist/parser/XPathParser2.java | [
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if ((seen == INVOKENONVIRTUAL) && getMethodSig().equals(getSigConstantOperand())) { | if ((seen == INVOKENONVIRTUAL) && getMethodName().equals(getNameConstantOperand()) && getMethodSig().equals(getSigConstantOperand())) { | public void sawOpcode(int seen) { switch (state) { case SEEN_NOTHING: if (seen == ALOAD_0) { argTypes = Type.getArgumentTypes(this.getMethodSig()); curParm = 0; curParmOffset = 1; if (argTypes.length > 0) state = SEEN_PARM; else state = SEEN_LAST_PARM; } else state = SEEN_IN... | 10715 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10715/62ca49d117584e1039672e38e41ad58967e7d27d/UselessSubclassMethod.java/clean/findbugs/src/java/edu/umd/cs/findbugs/detect/UselessSubclassMethod.java | [
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if( j <= ( lo + h - 1 ) ) | if( j <= ( lo + h - 1 ) ) { | private void simpleSort( int lo, int hi, int d ) { int i; int j; int h; int bigN; int hp; int v; bigN = hi - lo + 1; if( bigN < 2 ) return; hp = 0; while( incs[ hp ] < bigN ) hp++; hp--; for( ; hp >= 0; hp--... | 639 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/639/8ce1de2178a0422105fa437c327b49fb5637ff28/CBZip2OutputStream.java/buggy/proposal/myrmidon/src/java/org/apache/aut/bzip2/CBZip2OutputStream.java | [
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case 54: break; case 17: | case 58: break; case 18: | public Yytoken yylex() throws java.io.IOException { int zzInput; int zzAction; // cached fields: int zzCurrentPosL; int zzMarkedPosL; int zzEndReadL = zzEndRead; char [] zzBufferL = zzBuffer; char [] zzCMapL = ZZ_CMAP; int [] zzTransL = ZZ_TRANS; int [] zzRowMapL = ZZ_ROWMAP; int [] z... | 45341 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45341/58e844dc77aa5d1ee9f4952f22f0f7b6b8469457/CSSTokenizerFilter.java/buggy/src/freenet/clients/http/filter/CSSTokenizerFilter.java | [
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Iterator i = wordTokens.iterator(); | Iterator<Token> i = wordTokens.iterator(); | public ConfidenceResult score(Result result) { Lattice lattice = new Lattice(result); LatticeOptimizer lop = new LatticeOptimizer(lattice); lop.optimize(); lattice.computeNodePosteriors(languageWeight); SausageMaker sm = new SausageMaker(lattice); Sausage s = sm.makeSausage... | 7874 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7874/063275f2440d27815582cc264f0c7b2969fbca80/MAPConfidenceScorer.java/buggy/src/sphinx4/edu/cmu/sphinx/result/MAPConfidenceScorer.java | [
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return new CPPASTFunctionTryBlockDeclarator(); } | return new CPPASTFunctionTryBlockDeclarator(); } | protected ICPPASTFunctionTryBlockDeclarator createTryBlockDeclarator() { return new CPPASTFunctionTryBlockDeclarator(); } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/c4c31b724fe73e8f69d2d4f9fcd98d3ff359a2d3/GNUCPPSourceParser.java/clean/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/dom/parser/cpp/GNUCPPSourceParser.java | [
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} | private void startInserter() { Logger.minor(this, "starting inserter"); SimpleFieldSet fs = exportPublicFieldSet(); // Remove some unnecessary fields that only cause collisions. // Delete entire ark.* field for now. Changing this and automatically moving to the new may be supported in future. fs.re... | 50619 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50619/cbc8d02e7f68958d17b1b62385b39f3b1675daf1/Node.java/buggy/src/freenet/node/Node.java | [
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throw new SAXException(tr("Unknown data type: '{0}'.{1}",token,(Main.pref.get("csv.importstring").equals("") ? (" "+tr("Maybe add an format string in preferences.")) : ""))); | throw new SAXException(tr("Unknown data type: \"{0}\".{1}",token,(Main.pref.get("csv.importstring").equals("") ? (" "+tr("Maybe add an format string in preferences.")) : ""))); | public Collection<GpsPoint> parse() throws SAXException, IOException { Collection<GpsPoint> data = new LinkedList<GpsPoint>(); String formatStr = Main.pref.get("csv.importstring"); if (formatStr == null) formatStr = in.readLine(); if (formatStr == null) throw new SAXException(tr("Could not detect data format s... | 2204 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2204/fea4f87ceb55f51fc31c2d0bbac19a83dc06fd89/RawCsvReader.java/buggy/src/org/openstreetmap/josm/io/RawCsvReader.java | [
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acceptor.start(); | LOG.trace("START Acceptor"); acceptor.start(); LOG.trace("STOP Acceptor"); | public void start() { if ( isStarted() ) return; _started = true; acceptor.start(); // Now, link all the pieces together, starting the various threads. RESULT_HANDLER.start(); router.initialize(); manager.initialize(); downloader.initialize(); SupernodeAssigner sa = new SupernodeAssigner(uploa... | 5134 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5134/4bd526b8baf99aecf39a7adb13395cdbdf8dc955/RouterService.java/buggy/components/gnutella-core/src/main/java/com/limegroup/gnutella/RouterService.java | [
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AST __t1175 = _t; | AST __t1160 = _t; | public final void triggerphrase(AST _t) throws RecognitionException { AST triggerphrase_AST_in = (_t == ASTNULL) ? null : (AST)_t; AST on = null; AST __t1172 = _t; AST tmp883_AST_in = (AST)_t; match(_t,TRIGGERS); _t = _t.getFirstChild(); block_colon(_t); _t = _retTree; AST __t1173 = _t; AST tmp884_AST_in... | 13952 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13952/daa15e07422d3491bbbb4d0060450c81983332a4/TreeParser01.java/buggy/trunk/org.prorefactor.core/src/org/prorefactor/treeparser01/TreeParser01.java | [
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s += generate(me); s += "\n\n"; | sb.append(generate(me)); sb.append(LINE_SEPARATOR).append(LINE_SEPARATOR); | public String generatePackage(Object p) { String s = ""; String packName = generateName(Model.getFacade().getLanguage(p)); s += "// package " + packName + " {\n"; Collection ownedElements = Model.getFacade().getOwnedElements(p); if (ownedElements != null) { Iterator own... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/c394f84b1db32fc3dd57c0a1956729d3451131bf/GeneratorCpp.java/clean/modules/cpp/src/org/argouml/language/cpp/generator/GeneratorCpp.java | [
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} catch(Exception e) { _callback.error(e); | } catch(Throwable t) { _callback.error(t); | public void loadSettings(boolean notifyOnClear) { synchronized (_loadThreadLock) { //If settings are already being loaded, interrupt and wait for them //to complete. Note that we cannot hold this' monitor when calling //join(); doing so may result in deadlock! On the othe... | 5134 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5134/e4b24ef58cc77022f26819a07ebcb80a084e285e/FileManager.java/buggy/components/gnutella-core/src/main/java/com/limegroup/gnutella/FileManager.java | [
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Dimension screen = Toolkit.getDefaultToolkit().getScreenSize(); window.setLocation((screen.width - window.getWidth()) / 2, (screen.height - window.getHeight()) / 2); window.setVisible(true); ReadDataDialog readDialog = new ReadDataDialog("Welcome to HaploView", window); readDialog.pack(); readDialog.setVisible(true);... | window.setVisible(true); ReadDataDialog readDialog = new ReadDataDialog("Welcome to HaploView", window); readDialog.pack(); readDialog.setVisible(true); } | public static void main(String[] args) {//throws IOException{ try { UIManager.setLookAndFeel(UIManager.getSystemLookAndFeelClassName()); } catch (Exception e) { } //setup view object HaploView window = new HaploView(); window.setTitle("HaploView beta"); window.se... | 51222 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51222/fa8cd72699dd38dbfdbf2d80885613a61937797f/HaploView.java/clean/edu/mit/wi/haploview/HaploView.java | [
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if (isFixedPitch != 0) | } if (isFixedPitch != 0) { | public int getFlags() { int flags = 32; // Use Adobe Standard charset if (italicAngle != 0) flags = flags | 64; if (isFixedPitch != 0) flags = flags | 2; if (hasSerifs) flags = flags | 1; return flags; } | 5268 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5268/2e2226dd0dd6733fdab0c36331723114a46eddd8/TTFFile.java/buggy/src/org/apache/fop/fonts/TTFFile.java | [
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fs.put("URI", uri.toString(false)); | fs.put("URI", uri.toString(false, false)); | public synchronized SimpleFieldSet getFieldSet() { SimpleFieldSet fs = new SimpleFieldSet(); // we will need multi-level later... fs.put("Type", "GET"); fs.put("URI", uri.toString(false)); fs.put("Identifier", identifier); fs.put("Verbosity", Integer.toString(verbosity)); fs.put("PriorityClass", Short.toString(p... | 45341 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45341/1c876261ab73159d57a26624667ec7bf7acd15b8/ClientGet.java/clean/src/freenet/node/fcp/ClientGet.java | [
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throw new MessageInvalidException(ProtocolErrorMessage.MISSING_FIELD, "Error: NoteText field missing", null); | throw new MessageInvalidException(ProtocolErrorMessage.MISSING_FIELD, "Error: NoteText field missing", null, false); | public void run(FCPConnectionHandler handler, Node node) throws MessageInvalidException { String nodeIdentifier = fs.get("NodeIdentifier"); if( nodeIdentifier == null ) { throw new MessageInvalidException(ProtocolErrorMessage.MISSING_FIELD, "Error: NodeIdentifier field missing", null); } PeerNode pn = node.getPe... | 51834 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51834/bbb3c23ec38ea1c7abb48040a17f5fc7932248bc/ModifyPeerNote.java/buggy/src/freenet/node/fcp/ModifyPeerNote.java | [
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PatternDescr d = null; | public void expander_lhs_block(AndDescr descrs) throws RecognitionException { PatternDescr d = null; String text = null; try { // C:\Projects\jboss-rules\drools-compiler\src\main\resources\org\drools\lang\drl.g:348:17: ( ( options {greedy=false; } : '>' d= lhs | ( options {greedy=... | 6736 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6736/afa2dad261bf082d1acd2655e8290f80c6bffb15/RuleParser.java/clean/drools-compiler/src/main/java/org/drools/lang/RuleParser.java | [
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public void init() { if (gatherRequestsHandler == null) { gatherRequestsHandler = new GatherRequestsQueues((ProActiveComponent)owner); List<Object> interfaces = Arrays.asList(owner.getFcInterfaces()); Iterator<Object> it = interfaces.iterator(); while (it.hasNext... | 58694 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58694/134b58dbe6bf0d770561403db7684f11f01581d9/GathercastControllerImpl.java/clean/src/org/objectweb/proactive/core/component/controller/GathercastControllerImpl.java | [
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GROUP_SEPARATOR = GroupServiceConfiguration.getConfiguration().getNodeSeparator(); EVERYONE_GROUP_KEY = "local" + GROUP_SEPARATOR + "0"; EVERYONE_GROUP_PRINCIPAL_KEY = "3." + EVERYONE_GROUP_KEY; NOONE_GROUP_PRINCIPAL_KEY = "3.local" + GROUP_SEPARATOR + "999"; STUDENT_GROUP_PRINCIPAL_KEY = "3.local" + GROUP_SEPARATOR +... | protected void setUp(){ String msg = null; IPermission[] retrievedPermissions = null; IPermission newPermission, retrievedPermission = null; java.util.Date effectiveDate = new java.util.Date(); java.util.Date expirationDate = new java.util.Date(System.currentTimeMillis() + (60 * 60 * 24 * 1000)); int ... | 24959 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/24959/70425da9c88c1f1e75e7b3658c9c72c73b1a7f6e/AuthorizationTester.java/clean/tests/org/jasig/portal/security/provider/AuthorizationTester.java | [
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Atom atom = new Atom("N"); LonePair lp = new LonePair(); | Atom atom = builder.newAtom("N"); LonePair lp = builder.newLonePair(); | public void testGetAtom() { Atom atom = new Atom("N"); LonePair lp = new LonePair(); assertNull(lp.getAtom()); lp.setAtom(atom); assertEquals(atom, lp.getAtom()); } | 1306 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1306/3d4f8a67608c1a4004a21e4da478a610bb53ee73/LonePairTest.java/clean/src/org/openscience/cdk/test/LonePairTest.java | [
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AST __t1356 = _t; | AST __t1357 = _t; | public final void framephrase(AST _t) throws RecognitionException { AST framephrase_AST_in = (_t == ASTNULL) ? null : (AST)_t; AST __t1351 = _t; AST tmp154_AST_in = (AST)_t; match(_t,WITH); _t = _t.getFirstChild(); { _loop1381: do { if (_t==null) _t=ASTNULL; switch ( _t.getType()) { case ACCUMULATE: ... | 13952 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13952/865876f0e6319c071fef156818ff116c276cfdff/JPTreeParser.java/clean/trunk/org.prorefactor.core/src/org/prorefactor/treeparserbase/JPTreeParser.java | [
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return super.performOk(); } | if (clearUserSettings) IDEEncoding.clearUserEncodings(); encodingEditor.store(); return super.performOk(); } | public boolean performOk() { String setting = null; if (!defaultEncodingButton.getSelection()) setting = encodingCombo.getText(); if(clearUserSettings) IDEEncoding.clearUserEncodings(); if(hasNewEncoding(setting)) IDEEncoding.setResourceE... | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/22b03e49369c0d636219d7fbdbd8bd91ecb4078b/IDEEditorsPreferencePage.java/clean/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/ide/dialogs/IDEEditorsPreferencePage.java | [
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List list = new ArrayList(mementos.length); | List list = new ArrayList(mementos.length); | static List readCategoryDefinitions( IMemento memento, String name, String pluginIdOverride) { if (memento == null || name == null) throw new NullPointerException(); IMemento[] mementos = memento.getChildren(name); if (mementos == null) throw new NullPointerException(); List list = new ArrayList(mementos.le... | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/664efbbd6fd6dba5c4d118b10afe31ab34b6890a/Persistence.java/clean/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/commands/Persistence.java | [
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String source = "http: | String source = "http: | protected void createMetaAnnotations() { String source = "http://www.eclipse.org/gmf/2005/constraints/meta"; addAnnotation (getTypeModelFacet_ModelElementSelector(), source, new String[] { "def", "context", "ocl", "metaClass.ecoreClass" })... | 7409 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7409/a316ff755aeeb03851345a627f274adf9c4051ca/GMFGenPackageImpl.java/clean/plugins/org.eclipse.gmf.codegen/src/org/eclipse/gmf/codegen/gmfgen/impl/GMFGenPackageImpl.java | [
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if (createLink == false) return createStatus(IStatus.OK, ""); | if (createLink == false) { return createStatus(IStatus.OK, ""); } | public IStatus validateLinkLocation(IResource linkHandle) { if (linkTargetField == null || linkTargetField.isDisposed()) return createStatus(IStatus.OK, ""); //$NON-NLS-1$ IWorkspace workspace = IDEWorkbenchPlugin.getPluginWorkspace(); IPath path = new Path(linkTarget); if (cr... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/e38d295ea613cf9f08aadb93a84a33d2e91abc5f/CreateLinkedResourceGroup.java/clean/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/ide/dialogs/CreateLinkedResourceGroup.java | [
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String s1 = d[count].toString().trim(); String s2 = ("" + rs.getFloat("pk")).trim(); | String s1 = d[count].toString().trim(); String s2 = ("" + rs.getFloat("pk")).trim(); | public void testPrimaryKeyReal0024() throws Exception { Float d[] = { new Float(-1.0), new Float(1234.543), new Float(0.0), new Float(1), new Float(-2.0), new Float(0.14), new Float(0.79), new Float(1000000.12345),... | 5753 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5753/3536f07067bcf3c572aa820c500e64c50499f6c5/TimestampTest.java/buggy/src/test/net/sourceforge/jtds/test/TimestampTest.java | [
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public org.quickfix.field.UnderlyingCPRegType getUnderlyingCPRegType() throws FieldNotFound { org.quickfix.field.UnderlyingCPRegType value = new org.quickfix.field.UnderlyingCPRegType(); | public quickfix.field.UnderlyingCPRegType getUnderlyingCPRegType() throws FieldNotFound { quickfix.field.UnderlyingCPRegType value = new quickfix.field.UnderlyingCPRegType(); | public org.quickfix.field.UnderlyingCPRegType getUnderlyingCPRegType() throws FieldNotFound { org.quickfix.field.UnderlyingCPRegType value = new org.quickfix.field.UnderlyingCPRegType(); getField(value); return value; } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/MarketDataIncrementalRefresh.java/clean/src/java/src/quickfix/fix44/MarketDataIncrementalRefresh.java | [
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public void mMISC() throws RecognitionException { int MISC_StartIndex = input.index(); try { int type = MISC; int start = getCharIndex(); int line = getLine(); int charPosition = getCharPositionInLine(); int channel = Token.DEFAULT_CHANNEL; ... | 5490 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5490/cdf6cb875caeaced53629d36cdc1a31cdc22d9ca/RuleParserLexer.java/clean/drools-compiler/src/main/java/org/drools/lang/RuleParserLexer.java | [
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xstream = new XStream(new XppDriver()); | objectToXml = new ObjectToXml(); | public void initialise() throws InitialisationException { xstream = new XStream(new XppDriver()); remoteTransformer = new XmlToObject(); remoteTransformer.setReturnClass(AdminNotification.class); } | 28323 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/28323/e4a596928caf8df6fd4e25eaf0066305766f0ed9/MuleManagerComponent.java/buggy/src/java/org/mule/impl/internal/admin/MuleManagerComponent.java | [
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if (isPreciseType && target != null) { methOp.refine(target, true); } | private void generateFrom(int fromIndex) { if (DBG_BB || DBG_SELECTED) { db("generating code into " + currentBBLE + " with runoff " + runoff); } currentBBLE.setGenerated(); endOfBasicBlock = fallThrough = false; lastInstr = null; bcodes.reset(fromIndex); while (true) { // Must keep curr... | 49871 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49871/5f5affa5826a7b2af5ec8e1b72880a825023dc9f/OPT_BC2IR.java/clean/rvm/src/vm/compilers/optimizing/ir/conversions/bc2hir/OPT_BC2IR.java | [
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ready = _readyJobs.size(); if (ready > 0) rv = (Job)_readyJobs.remove(0); | if (_readyJobs.size() > 0) { return (Job)_readyJobs.remove(0); } else { try { _readyJobs.wait(); } catch (InterruptedException ie) {} } | Job getNext() { while (_alive) { Job rv = null; int ready = 0; synchronized (_readyJobs) { ready = _readyJobs.size(); if (ready > 0) rv = (Job)_readyJobs.remove(0); } if (rv != null) { // we... | 45677 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45677/6ef22166f97d655b56ae3ef97650d494ac89f3d8/JobQueue.java/clean/router/java/src/net/i2p/router/JobQueue.java | [
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if (!m_inInnerClass) { | if (!inInnerClass) { | public void visitReferenceExpression(PsiReferenceExpression ref) { super.visitReferenceExpression(ref); if (!m_inInnerClass) { return; } final PsiElement element = ref.resolve(); if (m_variable.equals(element)) { m_usedInInnerClass = true; } } | 17306 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17306/dba8b183fc1b08e7ad664812bfc0c64d1e4abd3c/VariableUsedInInnerClassVisitor.java/clean/plugins/InspectionGadgets/src/com/siyeh/ig/psiutils/VariableUsedInInnerClassVisitor.java | [
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result.append(line.substring(4)); result.append(" "); | if (line.length() > 4) { result.append(line.substring(4)); result.append(" "); } | private void append(String line) { result.append(line.substring(4)); result.append(" "); } | 506 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/506/057c5dad4562ff77d66c95cf3633b53b94995a96/SmtpResponseReader.java/buggy/src/main/org/apache/tools/mail/SmtpResponseReader.java | [
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public org.quickfix.field.DueToRelated getDueToRelated() throws FieldNotFound { org.quickfix.field.DueToRelated value = new org.quickfix.field.DueToRelated(); | public quickfix.field.DueToRelated getDueToRelated() throws FieldNotFound { quickfix.field.DueToRelated value = new quickfix.field.DueToRelated(); | public org.quickfix.field.DueToRelated getDueToRelated() throws FieldNotFound { org.quickfix.field.DueToRelated value = new org.quickfix.field.DueToRelated(); getField(value); return value; } | 5926 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5926/fecc27f98261270772ff182a1d4dfd94b5daa73d/SecurityStatus.java/buggy/src/java/src/quickfix/fix42/SecurityStatus.java | [
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writer.write( " class A { public: void a(); }; " ); writer.write( " class B : public virtual A { public: void b(); };" ); writer.write( " class C : public virtual A { public: void c(); };" ); writer.write( " class D : public B, C { public: void d(); };" ); | writer.write( " class A { public: void a(); }; " ); writer.write( " class B : public virtual A { public: void b(); };" ); writer.write( " class C : public virtual A { public: void c(); };" ); writer.write( " class D : public B, C { public: void d(); };" ); | public void testBug51260() throws Exception{ StringWriter writer = new StringWriter(); writer.write( " class A { public: void a(); }; " ); writer.write( " class B : public virtual A { public: void b(); };" ); writer.write( " class C : public virtual A { public: void c(); };" ); writer.write( " class D : public B,... | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/d730ff0f947954910a1a59eb5fe977d0983fd23e/CompletionParseTest.java/buggy/core/org.eclipse.cdt.core.tests/parser/org/eclipse/cdt/core/parser/tests/CompletionParseTest.java | [
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for (ExceptionSet.ThrownExceptionIterator i = thrownExceptionSet.iterator(); i.hasNext(); ) { | for (ExceptionSet.ThrownExceptionIterator i = thrownExceptionSet.iterator(); i.hasNext();) { | private ExceptionSet computeEdgeExceptionSet(Edge edge, ExceptionSet thrownExceptionSet) { ExceptionSet result = exceptionSetFactory.createExceptionSet(); if (edge.getType() == UNHANDLED_EXCEPTION_EDGE) { // The unhandled exception edge always comes // after all of the handled exception edges. result.addAll(th... | 7352 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7352/4748a5a9b76f3dd763ee6bc7755c932a711bd6a6/TypeAnalysis.java/clean/findbugs/src/java/edu/umd/cs/findbugs/ba/TypeAnalysis.java | [
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if(baseClass != null){ baseClassFileName = baseClass.getLocation().toString(); } else { | protected String constructHeaderFileContent(String lineDelimiter){ StringBuffer text = new StringBuffer(); boolean extendingBase = false; String baseClassName = getBaseClassName(); String baseClassFileName = ""; if((baseClassName != null) && (baseClassName.length() > 0)) { extendingBase = true; List classEle... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/8dba12bff30d80a18f15f415db1e8b5e85a3aee1/NewClassWizardPage.java/buggy/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/ui/wizards/NewClassWizardPage.java | [
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if (hosts==1) { mapToPartitionZero(str, partitionMap); } else { | public static void run(SIRStream str, JInterfaceDeclaration[] interfaces, SIRInterfaceTable[] interfaceTables, SIRStructure[] structs, SIRHelper[] helpers, SIRGlobal global) { Has... | 47772 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47772/3550df718d0025a81cf034a4bc7e5bbe4167f83f/ClusterBackend.java/buggy/streams/src/at/dms/kjc/cluster/ClusterBackend.java | [
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float nitrogenGathered = myNitrogenConsumerDefinitionImpl .getMostResourceFromStore(); float nitrogenPushed = myNitrogenProducerDefinitionImpl .pushResourceToStore(nitrogenGathered); | float nitrogenGathered = myNitrogenConsumerDefinitionImpl .getMostResourceFromStore(); myNitrogenProducerDefinitionImpl.pushResourceToStore(nitrogenGathered); | private void getAndPushResources() { float powerGathered = myPowerConsumerDefinitionImpl .getMostResourceFromStore(); float powerPushed = myPowerProducerDefinitionImpl .pushResourceToStore(powerGathered); float potableWaterGathered = myPotableWaterConsumerDefinitio... | 5015 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5015/397a74b47f2f52b66dbe5e307fb37ee5e164487d/InjectorImpl.java/buggy/BIOSIM/src/com/traclabs/biosim/server/simulation/framework/InjectorImpl.java | [
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public static boolean isNullHashtable(Hashtable h ) { if (h==null) return true; else if (h.isEmpty()) return true; return false; } | 6392 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6392/8837cda25486b5a2d14679775489ef6ba7257597/Utils.java/clean/src/eionet/gdem/utils/Utils.java | [
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match("&&"); if (failed) return ; | match("exists"); if (failed) return ; | public void mT70() throws RecognitionException { try { ruleNestingLevel++; int _type = T70; int _start = getCharIndex(); int _line = getLine(); int _charPosition = getCharPositionInLine(); int _channel = Token.DEFAULT_CHANNEL; // D:... | 6736 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6736/c3437c2488c314384990c4282a547e0f92ca02c2/DRLLexer.java/clean/drools-compiler/src/main/java/org/drools/lang/DRLLexer.java | [
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public void testJarAndClassName() { | public void testJarAndClassName() { | public void testJarAndClassName() { expectBuildException("testJarAndClassName", "Should not be able to set both classname AND jar"); } | 506 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/506/00e6624c1927ca0775d4d2cf2b3c8a227814c971/JavaTest.java/buggy/src/testcases/org/apache/tools/ant/taskdefs/JavaTest.java | [
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double length = ap3d.getBondLengthValue(atomA.getID(), unplacedAtom.getID()); double angle = (ap3d.getAngleValue(atomB.getID(), atomA.getID(), unplacedAtom.getID())) * Math.PI / 180; | double length = ap3d.getBondLengthValue(atomA.getAtomTypeName(), unplacedAtom.getAtomTypeName()); double angle = (ap3d.getAngleValue(atomB.getAtomTypeName(), atomA.getAtomTypeName(), unplacedAtom.getAtomTypeName())) * Math.PI / 180; | public void setBranchAtom(Atom unplacedAtom, Atom atomA, AtomContainer atomNeighbours) throws Exception { //System.out.println("****** SET Branch Atom ****** >"+molecule.getAtomNumber(unplacedAtom)); AtomContainer noCoords = new org.openscience.cdk.AtomContainer(); noCoords.addAtom(unplacedAtom); Point3d centerPla... | 45254 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45254/660e7fff9f6498248ec7df3d4da91b5f9020328f/ModelBuilder3D.java/clean/src/org/openscience/cdk/modeling/builder3d/ModelBuilder3D.java | [
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if (listMods.size() > 0 && strProperty != null) { hashProperties.put(strProperty, "true"); | if (!listMods.isEmpty()) { properties.modificationFound(); | public List getModifications(Date lastBuild, Date now) { java.util.List paramList = new java.util.ArrayList(); if (!strparamFile.isSet()) { strparamFile.setData("/"); } paramList.add(strparamFile); paramList.add(strparamBranch); paramList.add(strparamRepository);... | 55334 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55334/c879b70b24afa19e65b4d2d550b27f6e981821f1/SSCM.java/buggy/main/src/net/sourceforge/cruisecontrol/sourcecontrols/SSCM.java | [
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Object result = super.invoke(targetObject); | try { | public Object invoke(Object targetObject) throws NoSuchMethodException, IllegalAccessException, InvocationTargetException { SecurityContextHolder.setContext(securityContext); if ((SecurityContextHolder.getContext() != null) && (SecurityContextHolder.getContext().getAuthen... | 57740 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57740/7847af266436f53b4c69354df42bcd1261222f95/ContextPropagatingRemoteInvocation.java/clean/core/src/main/java/org/acegisecurity/context/rmi/ContextPropagatingRemoteInvocation.java | [
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fGrammarPool.cacheGrammars(grammars[0].getGrammarDescription().getGrammarType(), grammars); | fGrammarPool.cacheGrammars(grammars[0].getGrammarDescription().getGrammarType(), grammars); | private void initGrammarPool(ASModelImpl currModel) { // put all the grammars in fAbstractSchema into the grammar pool. if (fGrammarPool != null) { Grammar[] grammars = new Grammar[1]; if ((grammars[0] = (Grammar)currModel.getGrammar()) != null) { fGrammarPool.cacheGr... | 1831 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1831/0cd56637de031b03ea02b1e8067520f945150f36/DOMASBuilderImpl.java/clean/src/org/apache/xerces/parsers/DOMASBuilderImpl.java | [
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this.invalidateSession(); | this.invalidateDelegatedSession(); | public void lock(Object object, LockMode lockMode) throws HibernateException { try { this.getSession().lock(object, lockMode); } catch (HibernateException ex) { this.invalidateSession(); throw this.handleException(ex); } } | 9344 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9344/8a6aedd245de4f4ab4eb9c668d2f41d33c4c057a/SessionDelegator.java/buggy/trunk/java/hibernate3/src/java/org/nanocontainer/hibernate3/SessionDelegator.java | [
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getValue().setCharAt(idx, (char) RubyNumeric.fix2int(args[1])); | getMutableValue().setCharAt(idx, (char) RubyNumeric.fix2int(args[1])); | public IRubyObject aset(IRubyObject[] args) { testFrozen("class"); int strLen = getValue().length(); if (checkArgumentCount(args, 2, 3) == 3) { RubyString repl = stringValue(args[2]); int beg = RubyNumeric.fix2int(args[0]); int len = RubyNumeric.fix2int(args[1]); if (len < 0) { throw getRuntime().newInde... | 48300 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48300/185c54edbc79bd7b73f1c9400146d9a0aa45b0bb/RubyString.java/clean/src/org/jruby/RubyString.java | [
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updateBracketHighlight(); if(caretEvent) fireCaretEvent(); | moveCaretPosition(caret); | public void contentRemoved(Buffer buffer, int startLine, int start, int numLines, int length) { if(!buffer.isLoaded()) return; chunkCache.invalidateChunksFromPhys(startLine); // -lineCount because they are removed. repaintAndScroll(startLine,-numLines); if(/* numLines != 0 && */ foldVisibilityManager.... | 8690 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8690/1e5c06d33babc111443f974871ef7e451f1c9ba4/JEditTextArea.java/clean/org/gjt/sp/jedit/textarea/JEditTextArea.java | [
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Collection<LocalFile> result = doTask( future, seekFile, outputFileName, identifier, newDir, ".tar" ); | Collection<LocalFile> result = doTask( future, seekFile, expectedSize, outputFileName, identifier, newDir, ".tar" ); | public Collection<LocalFile> fetch( String identifier ) { try { if ( f == null || !f.isConnected() ) f = GeoUtil.connect( FTP.BINARY_FILE_TYPE ); assert f != null; File newDir = mkdir( identifier ); newDir = new File( newDir, "rawDataFiles" ); if ( !newD... | 4335 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4335/504a08d1f6d71cfa76e81073bcc6053053779ccb/RawDataFetcher.java/clean/gemma-core/src/main/java/ubic/gemma/loader/expression/geo/fetcher/RawDataFetcher.java | [
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private void receivePacket(UDPPacket packet, PeerState state) { | private void receivePacket(UDPPacketReader reader, UDPPacket packet, PeerState state) { | private void receivePacket(UDPPacket packet, PeerState state) { boolean isValid = packet.validate(state.getCurrentMACKey()); if (!isValid) { if (state.getNextMACKey() != null) isValid = packet.validate(state.getNextMACKey()); if (!isValid) { if (_log... | 3808 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3808/9e5fe7d2b6b1021feed75ebf5156f3ae8688026f/PacketHandler.java/clean/router/java/src/net/i2p/router/transport/udp/PacketHandler.java | [
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result.add(loadEJBLocalRef(e)); | result[i] = loadEJBLocalRef(e, new EJBLocalRef()); | public EJBLocalRef[] loadEJBLocalRefs(Element parent, EJBLocalRef[] resultType) { NodeList nodes = parent.getElementsByTagName("ejb-local-ref"); int length = nodes.getLength(); List result = new ArrayList(length); for (int i = 0; i < length; i++) { Element e = (Element) nodes.... | 12474 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12474/c5087214ca8f0e64c671620ee9fdf9258219e3e7/J2EELoader.java/clean/modules/core/src/java/org/apache/geronimo/xml/deployment/J2EELoader.java | [
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assertEquals(4, children.length); | assertEquals(bottomTrimCount, children.length); | public void testRestoreStateWithChange() throws Throwable { WorkbenchWindow window = openWorkbenchWindow(); ITrimManager trimManager = window.getTrimManager(); XMLMemento state = XMLMemento .createWriteRoot(IWorkbenchConstants.TAG_WINDOW); IStatus rc = window.saveState(state); assertEquals(IStatus.OK, rc.getSe... | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/09abd6c072ee160437e2839c0c4f49fbac5797c1/TrimLayoutTest.java/clean/tests/org.eclipse.ui.tests/Eclipse UI Tests/org/eclipse/ui/tests/api/TrimLayoutTest.java | [
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return jjMoveStringLiteralDfa3_0(active0, 0x8000000L, active1, 0L); | return jjMoveStringLiteralDfa3_0(active0, 0x10000000L, active1, 0L); | private final int jjMoveStringLiteralDfa2_0(long old0, long active0, long old1, long active1){ if (((active0 &= old0) | (active1 &= old1)) == 0L) return jjStartNfa_0(0, old0, old1); try { curChar = input_stream.readChar(); } catch(java.io.IOException e) { jjStopStringLiteralDfa_0(1, active0, active1); ... | 4167 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4167/c836f8ba4db292fc47b3c10e890ac860f91b3e6b/VhdlParserCoreTokenManager.java/buggy/src/_generated/net/sourceforge/veditor/parser/VhdlParserCoreTokenManager.java | [
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public abstract InputStream _createInputStream(View view, String path, boolean ignoreErrors) throws IOException; | public abstract InputStream _createInputStream(View view, Buffer buffer, String path, boolean ignoreErrors) throws IOException; | public abstract InputStream _createInputStream(View view, String path, boolean ignoreErrors) throws IOException; | 6564 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6564/5307a8af5275123bc553b4741bb65bd970d34c21/VFS.java/clean/org/gjt/sp/jedit/io/VFS.java | [
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pushRubyClass(implementationClass.parentModule); | pushRubyClass((RubyModule)implementationClass.getCRef().getValue()); | public void preReflectedMethodInternalCall(RubyModule implementationClass, IRubyObject recv, String name, IRubyObject[] args, boolean noSuper) { pushRubyClass(implementationClass.parentModule); pushIter(getCurrentIter().isPre() ? Iter.ITER_CUR : Iter.ITER_NOT); pushFrame(recv, args, name, noSup... | 47134 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47134/a1b8fc1d456e3d5c6e01579b88773383068aa85c/ThreadContext.java/buggy/src/org/jruby/runtime/ThreadContext.java | [
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yaccValue = new Token(""+c, getPosition(null, false)); | yaccValue = new Token(""+c, getPositionMinusOne()); | private int parseQuote(char c) { char term; char paren; if (!Character.isLetterOrDigit(c)) { term = c; c = 'Q'; } else { term = src.read(); if (Character.isLetterOrDigit(term) /* no mb || ismbchar(term)*/) { throw new Syn... | 46770 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46770/67a441c8ea70c9532cdedb2001a6741b63e793ae/RubyYaccLexer.java/clean/src/org/jruby/lexer/yacc/RubyYaccLexer.java | [
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return eDynamicIsSet( eFeature ); | return super.eIsSet( featureID ); | public boolean eIsSet( EStructuralFeature eFeature ) { switch ( eDerivedStructuralFeatureID( eFeature ) ) { case AttributePackage.DATA_POINT__COMPONENTS : return components != null && !components.isEmpty( ); case AttributePackage.DATA_POINT__PREFIX : return PREFIX_EDEFAULT == null ? prefix != null : !... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/036e8c78765730b146e5854b9d6c397a296fed86/DataPointImpl.java/buggy/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/model/attribute/impl/DataPointImpl.java | [
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} | } | public double getDefaultDouble(String key) { Assert.notNull(key, "Key cannot be null"); if (!defaults.containsKey(key)) { return 0.0; } return Double.parseDouble((String) defaults.get(key)); } | 55916 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55916/4b6b4231f830cf3aa5046025ca47e7366f7ddeb1/AbstractSettings.java/buggy/sandbox/src/org/springframework/richclient/settings/AbstractSettings.java | [
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if (jjCanMove_4(hiByte, i1, i2, l1, l2)) | if (jjCanMove_3(hiByte, i1, i2, l1, l2)) | private final int jjMoveNfa_0(int startState, int curPos){ int[] nextStates; int startsAt = 0; jjnewStateCnt = 76; int i = 1; jjstateSet[0] = startState; int j, kind = 0x7fffffff; for (;;) { if (++jjround == 0x7fffffff) ReInitRounds(); if (curChar < 64) { long l = 1L << cu... | 45239 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45239/f38eb6c624a4eb8efd45a15aed431041359b17c0/XTFTokenizerTokenManager.java/buggy/WEB-INF/src/org/cdlib/xtf/textIndexer/tokenizer/XTFTokenizerTokenManager.java | [
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writeAttribute(atributes[0]); | writeAttribute(attributes[0]); | private void writeUniqueFinder(final CopeUniqueConstraint constraint) throws IOException, InjectorParseException { // TODO fix spelling final CopeAttribute[] atributes = constraint.getAttributes(); final String className = atributes[0].getParent().name; writeCommentHeader(); o.write("\t * "); o.write(format(FI... | 50290 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50290/9751dd8ef4c8e89304b402ba482386199975b0e8/Generator.java/clean/instrument/src/com/exedio/cope/instrument/Generator.java | [
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public void testCumulativeProbabilityNegative() { | public void testCumulativeProbabilityNegative() throws Exception { | public void testCumulativeProbabilityNegative() { testProbability(-1.0, 0.0); } | 9305 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9305/6c07bd13a84d27f6df35a9bf00c46e63b5b17639/ExponentialDistributionTest.java/clean/src/test/org/apache/commons/math/distribution/ExponentialDistributionTest.java | [
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code.setPosition(Position.line(sym.pos)); | if (global.args.debuginfo.value) code.setPosition(Position.line(sym.pos)); | private void genDef(Symbol sym, ValDef[] parameters, Tree rhs, MSILType toType) { MethodBase method = tc.getMethod(sym); params.clear(); locals.clear(); int argOffset = method.IsStatic() ? 0 : 1; for (int i = 0; i < parameters.length; i++) { params.put(parameters[i].symbol(), new Integer(i + argOffset)); } if (... | 9617 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9617/d2314c91fed2c0bb70732a2d7bc3dfd50cf88d03/GenMSIL.java/buggy/sources/scalac/backend/msil/GenMSIL.java | [
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Utilities.drawTabbedText(txt, bounds.x, bounds.y + height / 2, g, tabEx, txt.offset); | Utilities.drawTabbedText(txt, bounds.x, bounds.y + ascent + height / 2, g, tabEx, txt.offset); | public void paint(GlyphView view, Graphics g, Shape a, int p0, int p1) { int height = (int) getHeight(view); Segment txt = view.getText(p0, p1); Rectangle bounds = a.getBounds(); TabExpander tabEx = null; View parent = view.getParent(); if (parent instanceof Tab... | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/8f1176391e1d000d946793693906d6dc8af29e19/GlyphView.java/buggy/core/src/classpath/javax/javax/swing/text/GlyphView.java | [
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if( label_t instanceof ScopedName ) label_t = ((ScopedName)label_t).resolvedTypeSpec(); | while( label_t instanceof ScopedName || label_t instanceof AliasTypeSpec ) { if( label_t instanceof ScopedName ) label_t = ((ScopedName)label_t).resolvedTypeSpec(); if( label_t instanceof AliasTypeSpec ) label_t = ((AliasTypeSpec)label_t).originalType(); } | private void printHelperClass (String className, PrintWriter ps) { if( !pack_name.equals("")) ps.println("package " + pack_name + ";" ); printImport(ps); printClassComment( className, ps ); ps.println("public class " + className + "Helper"); ps.println("{"); ps.println("\tprivate static org.omg... | 46355 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46355/48b9aa808b8389f6e222cfb9c7d15bfd24daf947/UnionType.java/buggy/src/org/jacorb/idl/UnionType.java | [
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throw new CmsException("["+this.getClass().getName()+"]"+name,CmsException.C_NO_USER); | throw new CmsException("["+this.getClass().getName()+"]"+id,CmsException.C_NO_USER); | public CmsUser readUser(String name, int type) throws CmsException { PreparedStatement statement = null; ResultSet res = null; CmsUser user = null; try { statement = m_pool.getPreparedStatement(C_USERS_READ_KEY); statement.setString(1,name); statement.setInt(2,type); res = statement.executeQuery(... | 51784 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51784/2d9e397a561c34b8799cc4472b3c75f8ad54f0e2/CmsDbAccess.java/buggy/src/com/opencms/file/genericSql/CmsDbAccess.java | [
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if (buf.equals("PRIVMSG")) { recipient = tok.nextToken(); String chat = tok.nextToken(""); chat = chat.substring(2); listener.messagePrivMsg(nick, host, recipient, chat); return; } else if (buf.equals("NICK")) { String newname = tok.nextToken(""); newname = newname.substring(2); listener.messageNickChange(nick, host, n... | if (buf.equals("PRIVMSG")) { recipient = tok.nextToken(); String chat = tok.nextToken(""); chat = chat.substring(2); listener.messagePrivMsg(nick, host, recipient, chat); return; } else if (buf.equals("NICK")) { String newname = tok.nextToken(""); newname = newname.substring(2); listener.messageNickChange(nick, host, n... | void decipherMessage(String msg) { listener.log(msg); String nick; String host; String recipient; StringTokenizer tok = new StringTokenizer(msg, " "); String buf = tok.nextToken(); if (buf.indexOf("!") != -1) { nick = buf.substring(1, buf.indexOf("!")); host = buf.substring(buf.indexOf(... | 4867 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4867/13a5492f5df8208250f437a98b833f050ed86976/SephiaBot.java/clean/SephiaBot.java | [
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case '\'': case '\"': { exprBuffer.append(lookahead); String quote = lookahead; lookahead = tokenizer.nextToken(); while(!lookahead.equals(quote)) { exprBuffer.append(lookahead); lookahead = tokenizer.nextToken(); } exprBuffer.append(lookahead); lookahead = tokenizer.nextToken(); break; } case '{': { error = XSLMess... | exprBuffer.append(lookahead); lookahead = tokenizer.nextToken(); } exprBuffer.append(lookahead); lookahead = tokenizer.nextToken(); break; } case '{' : { error = XSLMessages.createMessage( XSLTErrorResources.ER_NO_CURLYBRACE, null); break; } case '}' : { buffer.setLength(0); XPath xpath = handler.createXPath... | public AVT(StylesheetHandler handler, String uri, String name, String rawName, String stringedValue) throws org.xml.sax.SAXException { m_uri = uri; m_name = name; m_rawName = rawName; StringTokenizer tokenizer = new StringTokenizer(stringedValue, "{}\"... | 2723 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2723/77ad973f1d6ad8f28fd358f2ba4d4c63da65d953/AVT.java/clean/src/org/apache/xalan/templates/AVT.java | [
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public Serializable lock(long objectID, boolean block) throws DeadlockException, NonExistantObjectIDException { Serializable obj = lockedObjectsMap.get(objectID); if (obj != null) { // already locked return obj; } keyTrans.lock(objectID); TSODataHeader hdr = ... | 55380 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55380/1bc9c87d2beb6a11f9220f2059bbd7d0d2760326/TSOTransaction.java/clean/src/com/sun/gi/objectstore/tso/TSOTransaction.java | [
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} else { MylarStatusHandler.log("Could not get icon overlay, connector UI not yet started.", this); } | } | public void decorate(Object element, IDecoration decoration) { if (element instanceof AbstractRepositoryQuery) { AbstractRepositoryQuery query = (AbstractRepositoryQuery) element; String repositoryUrl = query.getRepositoryUrl(); if (repositoryUrl != null) { try { URL url = new URL(repositoryUrl); dec... | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/408be6e7a45df25a60b7feeb52720f603b9f519d/RepositoryTaskDecorator.java/clean/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/internal/tasks/ui/RepositoryTaskDecorator.java | [
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kernelModule.defineMethod("taint", taint); kernelModule.defineMethod("tainted?", tainted); kernelModule.defineMethod("to_a", to_a); kernelModule.defineMethod("to_s", to_s); kernelModule.defineMethod("type", type); kernelModule.defineMethod("untaint", untaint); | kernelModule.defineMethod("taint", CallbackFactory.getMethod(RubyObject.class, "taint")); kernelModule.defineMethod("tainted?", CallbackFactory.getMethod(RubyObject.class, "tainted")); kernelModule.defineMethod("to_a", CallbackFactory.getMethod(RubyObject.class, "to_a")); kernelModule.defineMethod("to_s", CallbackFacto... | public static void createObjectClass(RubyModule kernelModule) { // TODO: convert to CallbackFactory invokes. Callback clone = new ReflectionCallbackMethod(RubyObject.class, "rbClone"); Callback dup = new ReflectionCallbackMethod(RubyObject.class, "dup"); Callback equal = new ReflectionCa... | 45221 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45221/4e4c0a90262b62b83d3fc5717371745bcc928c2b/RubyObject.java/clean/org/jruby/RubyObject.java | [
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if (keyCode=='3') new Bookmarks(display, null); | if (keyCode=='3') searchGroup(-1); | public void userKeyPressed(int keyCode){ if (keyCode==KEY_NUM0 /* || keyCode==MOTOE680_REALPLAYER CONFLICT WITH ALCATEL. (platform=J2ME)*/) { if (messageCount==0) return; Object atcursor=getFocusedObject(); Contact c=null; if (atcursor instanceof Contact) c=(Conta... | 57190 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57190/c0f8304f7e8de07ffea24e06252a1460dfacbda5/Roster.java/clean/full/src/Client/Roster.java | [
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temp_obj = evt.getArg(); if ( temp_obj instanceof Message ) { msg = (Message) temp_obj; temp_obj = msg.removeHeader(getName()); if ( temp_obj instanceof TotalHeader ) { TotalHeader hdr = (TotalHeader) temp_obj; | temp_obj=evt.getArg(); if(temp_obj instanceof Message) { msg=(Message)temp_obj; temp_obj=msg.removeHeader(getName()); if(temp_obj instanceof TotalHeader) { TotalHeader hdr=(TotalHeader)temp_obj; | public void up(Event evt) { Message msg; //System.out.println("UP: " + evt); Object temp_obj; // used for type checking before performing casts switch( evt.getType() ) { case Event.SET_LOCAL_ADDRESS: temp_obj = evt.getArg(); if ( temp_obj instanceof Address ) { local_addr = (Address) ... | 50160 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50160/5ad015d9a78e1da3350d9b398b46b2f5d4508564/TOTAL_OLD.java/buggy/src/org/jgroups/protocols/TOTAL_OLD.java | [
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