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AtlasAnalyticsLab
/
AtlasPatch

Image Segmentation
sam2
English
whole-slide-imaging
histopathology
tissue-segmentation
Model card Files Files and versions
xet
Community
1

Instructions to use AtlasAnalyticsLab/AtlasPatch with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

  • Libraries
  • sam2

    How to use AtlasAnalyticsLab/AtlasPatch with sam2:

    # Use SAM2 with images
    import torch
    from sam2.sam2_image_predictor import SAM2ImagePredictor
    
    predictor = SAM2ImagePredictor.from_pretrained(AtlasAnalyticsLab/AtlasPatch)
    
    with torch.inference_mode(), torch.autocast("cuda", dtype=torch.bfloat16):
        predictor.set_image(<your_image>)
        masks, _, _ = predictor.predict(<input_prompts>)
    # Use SAM2 with videos
    import torch
    from sam2.sam2_video_predictor import SAM2VideoPredictor
    
    predictor = SAM2VideoPredictor.from_pretrained(AtlasAnalyticsLab/AtlasPatch)
    
    with torch.inference_mode(), torch.autocast("cuda", dtype=torch.bfloat16):
        state = predictor.init_state(<your_video>)
    
        # add new prompts and instantly get the output on the same frame
        frame_idx, object_ids, masks = predictor.add_new_points(state, <your_prompts>):
    
        # propagate the prompts to get masklets throughout the video
        for frame_idx, object_ids, masks in predictor.propagate_in_video(state):
            ...
  • Notebooks
  • Google Colab
  • Kaggle
AtlasPatch
156 MB
Ctrl+K
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  • 2 contributors
History: 10 commits
AhmedAlagha's picture
AhmedAlagha
Update README.md
c50a4e8 verified 3 months ago
  • .gitattributes
    1.52 kB
    initial commit 5 months ago
  • README.md
    3.98 kB
    Update README.md 3 months ago
  • model.pth

    Detected Pickle imports (3)

    • "torch._utils._rebuild_tensor_v2",
    • "torch.FloatStorage",
    • "collections.OrderedDict"

    What is a pickle import?

    156 MB
    xet
    feat: upload the model checkpoint 5 months ago
  • sam2.1_hiera_t.yaml
    3.86 kB
    feat: add configuration file for SAM2 5 months ago