repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/main.py | #!/usr/bin/env python
"""
main.py for project-NN-pytorch/projects
The training/inference process wrapper.
Dataset API is replaced with NII_MergeDataSetLoader.
It is more convenient to train model on corpora stored in different directories.
Requires model.py and config.py (config_merge_datasets.py)
Usage: $: python ... | 8,626 | 36.34632 | 80 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/config_train_toyset_ID_4.py | #!/usr/bin/env python
"""
config.py for project-NN-pytorch/projects
Usage:
For training, change Configuration for training stage
For inference, change Configuration for inference stage
"""
import os
import pandas as pd
__author__ = "Xin Wang"
__email__ = "wangxin@nii.ac.jp"
__copyright__ = "Copyright 2022, Xin Wa... | 9,125 | 34.235521 | 80 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/config_train_toyset_ID_6.py | #!/usr/bin/env python
"""
config.py for project-NN-pytorch/projects
Usage:
For training, change Configuration for training stage
For inference, change Configuration for inference stage
"""
import os
import pandas as pd
__author__ = "Xin Wang"
__email__ = "wangxin@nii.ac.jp"
__copyright__ = "Copyright 2022, Xin Wa... | 9,125 | 34.235521 | 80 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/config_train_toyset_ID_7.py | #!/usr/bin/env python
"""
config.py for project-NN-pytorch/projects
Usage:
For training, change Configuration for training stage
For inference, change Configuration for inference stage
"""
import os
import pandas as pd
__author__ = "Xin Wang"
__email__ = "wangxin@nii.ac.jp"
__copyright__ = "Copyright 2022, Xin Wa... | 9,124 | 34.23166 | 80 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/config_auto.py | #!/usr/bin/env python
"""
config.py
This configuration file will read environment variables
for configuration. it is used for scoring
It assumes that input data will be waveform files (*.wav)
No need to change settings here
"""
import os
__author__ = "Xin Wang"
__email__ = "wangxin@nii.ac.jp"
__copyright__ = "Copyr... | 2,644 | 26.268041 | 75 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/model-ID-2/model.py | #!/usr/bin/env python
"""
model.py
Self defined model definition.
Usage:
"""
from __future__ import absolute_import
from __future__ import print_function
import sys
import numpy as np
import torch
import torch.nn as torch_nn
import torch.nn.functional as torch_nn_func
import sandbox.block_nn as nii_nn
import sandb... | 18,097 | 33.018797 | 79 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/model-ID-2/data_augment.py | #!/usr/bin/env python
"""Functions for data augmentation
These functions are written using Numpy.
They should be used before data are casted into torch.tensor.
For example, use them in config.py:input_trans_fns or output_trans_fns
"""
import os
import sys
import numpy as np
from core_scripts.other_tools import deb... | 1,311 | 29.511628 | 72 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/model-ID-6/model.py | #!/usr/bin/env python
"""
model.py
Self defined model definition.
Usage:
"""
from __future__ import absolute_import
from __future__ import print_function
import sys
import numpy as np
import torch
import torch.nn as torch_nn
import torch.nn.functional as torch_nn_func
import sandbox.block_nn as nii_nn
import sandb... | 18,709 | 33.142336 | 79 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/model-ID-6/data_augment.py | #!/usr/bin/env python
"""Functions for data augmentation
These functions are written using Numpy.
They should be used before data are casted into torch.tensor.
For example, use them in config.py:input_trans_fns or output_trans_fns
"""
import os
import sys
import numpy as np
from core_scripts.other_tools import deb... | 4,445 | 31.452555 | 78 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/model-ID-4/model.py | #!/usr/bin/env python
"""
model.py
Self defined model definition.
Usage:
"""
from __future__ import absolute_import
from __future__ import print_function
import sys
import numpy as np
import torch
import torch.nn as torch_nn
import torch.nn.functional as torch_nn_func
import sandbox.block_nn as nii_nn
import sandb... | 18,709 | 33.142336 | 79 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/model-ID-4/data_augment.py | #!/usr/bin/env python
"""Functions for data augmentation
These functions are written using Numpy.
They should be used before data are casted into torch.tensor.
For example, use them in config.py:input_trans_fns or output_trans_fns
"""
import os
import sys
import numpy as np
from core_scripts.other_tools import deb... | 4,445 | 31.452555 | 78 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/model-ID-7/model.py | #!/usr/bin/env python
"""
model.py
Self defined model definition.
Usage:
"""
from __future__ import absolute_import
from __future__ import print_function
import sys
import numpy as np
import torch
import torch.nn as torch_nn
import torch.nn.functional as torch_nn_func
import sandbox.block_nn as nii_nn
import sandb... | 18,709 | 33.142336 | 79 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/project/09-asvspoof-vocoded-trn/model-ID-7/data_augment.py | #!/usr/bin/env python
"""Functions for data augmentation
These functions are written using Numpy.
They should be used before data are casted into torch.tensor.
For example, use them in config.py:input_trans_fns or output_trans_fns
"""
import os
import sys
import numpy as np
from core_scripts.other_tools import deb... | 4,445 | 31.452555 | 78 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/core_modules/a_softmax.py | #!/usr/bin/env python
"""
a_softmax layers
copied from https://github.com/Joyako/SphereFace-pytorch
"""
from __future__ import print_function
from collections import OrderedDict
import numpy as np
import torch
import torch.nn as torch_nn
import torch.nn.functional as torch_f
from torch.nn import Parameter
__autho... | 5,663 | 30.120879 | 75 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/core_modules/p2sgrad.py | #!/usr/bin/env python
"""
P2sGrad:
Zhang, X. et al. P2sgrad: Refined gradients for optimizing deep face models.
in Proc. CVPR 9906-9914, 2019
I think the grad defined in Eq.(11) is equivalent to define a MSE loss with 0
or 1 as target:
\mathcal{L}_i = \sum_{j=1}^{K} (\cos\theta_{i,j} - \delta(j == y_i))^2
The dif... | 3,964 | 27.52518 | 77 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/core_modules/am_softmax.py | #!/usr/bin/env python
"""
additive margin softmax layers
Wang, F., Cheng, J., Liu, W. & Liu, H.
Additive margin softmax for face verification. IEEE Signal Process. Lett. 2018
"""
from __future__ import print_function
from collections import OrderedDict
import numpy as np
import torch
import torch.nn as torch_nn
im... | 4,893 | 28.305389 | 78 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/core_modules/grad_rev.py | #!/usr/bin/env python
"""
grad_rev.py
Definition of gradient reverse layer
Copied from https://cyberagent.ai/blog/research/11863/
"""
from __future__ import absolute_import
from __future__ import print_function
import sys
import torch
import torch.nn as torch_nn
import torch.nn.functional as torch_nn_func
__author_... | 1,078 | 22.977778 | 60 | py |
project-NN-Pytorch-scripts | project-NN-Pytorch-scripts-master/core_modules/oc_softmax.py | #!/usr/bin/env python
"""
one class
One-class learning towards generalized voice spoofing detection
Zhang, You and Jiang, Fei and Duan, Zhiyao
arXiv preprint arXiv:2010.13995
"""
from __future__ import print_function
from collections import OrderedDict
import numpy as np
import torch
import torch.nn as torch_nn
impo... | 3,886 | 28.007463 | 76 | py |
matscipy | matscipy-master/discover_version.py | #
# Copyright 2022 Lars Pastewka
#
# ### MIT license
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, mer... | 3,204 | 32.736842 | 82 | py |
matscipy | matscipy-master/maintenance/copyright.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Found... | 3,148 | 31.132653 | 76 | py |
matscipy | matscipy-master/maintenance/replace_header.py | #
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# ... | 1,124 | 31.142857 | 71 | py |
matscipy | matscipy-master/matscipy/hessian_finite_differences.py | #
# Copyright 2014-2015, 2017, 2021 Lars Pastewka (U. Freiburg)
# 2018, 2020 Jan Griesser (U. Freiburg)
# 2014, 2020 James Kermode (Warwick U.)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/... | 1,542 | 30.489796 | 79 | py |
matscipy | matscipy-master/matscipy/precon.py | """Hessian preconditioner."""
import numpy as np
from ase.optimize.precon import Precon
from ase.calculators.calculator import equal
class HessianPrecon(Precon):
"""Preconditioner for dense Hessian."""
def __init__(self,
c_stab=0.01,
move_tol=0.1,
P=None,
... | 1,429 | 27.6 | 75 | py |
matscipy | matscipy-master/matscipy/socketcalc.py | #
# Copyright 2015-2016, 2020 James Kermode (Warwick U.)
# 2019 James Brixey (Warwick U.)
# 2016 Henry Lambert (King's College London)
# 2015 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program... | 41,228 | 39.861249 | 290 | py |
matscipy | matscipy-master/matscipy/atomic_strain.py | #
# Copyright 2014, 2020 Lars Pastewka (U. Freiburg)
# 2015, 2017 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General ... | 6,118 | 29.748744 | 82 | py |
matscipy | matscipy-master/matscipy/molecules.py | #
# Copyright 2022 Lucas Frérot (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Founda... | 6,141 | 36.224242 | 76 | py |
matscipy | matscipy-master/matscipy/spatial_correlation_function.py | #
# Copyright 2016, 2021 Lars Pastewka (U. Freiburg)
# 2016, 2018 Richard Jana (KIT & U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Ge... | 8,104 | 37.966346 | 72 | py |
matscipy | matscipy-master/matscipy/deformation.py | #
# Copyright 2017 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Found... | 4,220 | 30.266667 | 78 | py |
matscipy | matscipy-master/matscipy/visualise.py | #
# Copyright 2014-2015 James Kermode (Warwick U.)
# 2014-2015 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Pu... | 3,388 | 32.22549 | 82 | py |
matscipy | matscipy-master/matscipy/dislocation.py | #
# Copyright 2019, 2021 Lars Pastewka (U. Freiburg)
# 2018-2023 Petr Grigorev (Warwick U.)
# 2020 James Kermode (Warwick U.)
# 2019 Arnaud Allera (U. Lyon 1)
# 2019 Wolfram G. Nöhring (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github... | 110,569 | 34.644745 | 120 | py |
matscipy | matscipy-master/matscipy/rings.py | #
# Copyright 2014-2015 Lars Pastewka (U. Freiburg)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public ... | 1,893 | 29.548387 | 76 | py |
matscipy | matscipy-master/matscipy/logger.py | #
# Copyright 2015-2017, 2021 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Sof... | 6,687 | 25.967742 | 76 | py |
matscipy | matscipy-master/matscipy/pressurecoupling.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2020, 2022, 2023 Thomas Reichenbach (Fraunhofer IWM)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU... | 14,605 | 32.120181 | 79 | py |
matscipy | matscipy-master/matscipy/surface.py | #
# Copyright 2014, 2020 James Kermode (Warwick U.)
# 2019 James Brixey (Warwick U.)
# 2015 Punit Patel (Warwick U.)
# 2014 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software:... | 8,658 | 29.489437 | 114 | py |
matscipy | matscipy-master/matscipy/ffi.py | #
# Copyright 2022 Lucas Frérot (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Founda... | 1,444 | 33.404762 | 80 | py |
matscipy | matscipy-master/matscipy/numerical.py | #
# Copyright 2014-2015, 2017, 2021 Lars Pastewka (U. Freiburg)
# 2018, 2020 Jan Griesser (U. Freiburg)
# 2014, 2020 James Kermode (Warwick U.)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/... | 8,113 | 28.292419 | 95 | py |
matscipy | matscipy-master/matscipy/angle_distribution.py | #
# Copyright 2014-2015 Lars Pastewka (U. Freiburg)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public ... | 1,426 | 32.186047 | 78 | py |
matscipy | matscipy-master/matscipy/numpy_tricks.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Found... | 2,266 | 32.338235 | 93 | py |
matscipy | matscipy-master/matscipy/__init__.py | #
# Copyright 2015, 2017 Lars Pastewka (U. Freiburg)
# 2015 Till Junge (EPFL)
# 2014-2015 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it u... | 2,247 | 25.761905 | 72 | py |
matscipy | matscipy-master/matscipy/hydrogenate.py | #
# Copyright 2015 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Found... | 3,594 | 30.814159 | 77 | py |
matscipy | matscipy-master/matscipy/distributed_computation.py | #
# Copyright 2015 James Kermode (Warwick U.)
# 2015 Till Junge (EPFL)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publ... | 10,625 | 34.657718 | 86 | py |
matscipy | matscipy-master/matscipy/neighbours.py | #
# Copyright 2014-2015, 2017-2019, 2021 Lars Pastewka (U. Freiburg)
# 2020 Jonas Oldenstaedt (U. Freiburg)
# 2020 Wolfram G. Nöhring (U. Freiburg)
# 2019 Jan Griesser (U. Freiburg)
# 2015 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale... | 35,932 | 37.104984 | 117 | py |
matscipy | matscipy-master/matscipy/elasticity.py | #
# Copyright 2014-2015, 2020-2021 Lars Pastewka (U. Freiburg)
# 2021 Jan Griesser (U. Freiburg)
# 2021 Petr Grigorev (Warwick U.)
# 2014-2015, 2020 James Kermode (Warwick U.)
# 2015 Manuel Aldegunde
#
# matscipy - Materials science with Python at the atomic-scale
# https://githu... | 45,227 | 34.584579 | 136 | py |
matscipy | matscipy-master/matscipy/opls.py | #
# Copyright 2016-2017, 2023 Andreas Klemenz (Fraunhofer IWM)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Fre... | 28,475 | 35.743226 | 79 | py |
matscipy | matscipy-master/matscipy/drift.py | #
# Copyright 2017 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Found... | 2,109 | 30.029412 | 77 | py |
matscipy | matscipy-master/matscipy/cli/__init__.py | # ======================================================================
# matscipy - Python materials science tools
# https://github.com/libAtoms/matscipy
#
# Copyright (2020) Johannes Hörmann, University of Freiburg
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the G... | 926 | 47.789474 | 72 | py |
matscipy | matscipy-master/matscipy/cli/electrochemistry/c2d.py | #!/usr/bin/env python3
# PYTHON_ARGCOMPLETE_OK
# ======================================================================
# matscipy - Python materials science tools
# https://github.com/libAtoms/matscipy
#
# Copyright (2019) Johannes Hoermann, University of Freiburg
#
# This program is free software: you can redistribut... | 12,367 | 38.514377 | 100 | py |
matscipy | matscipy-master/matscipy/cli/electrochemistry/pnp.py | #!/usr/bin/env python3
# PYTHON_ARGCOMPLETE_OK
# ======================================================================
# matscipy - Python materials science tools
# https://github.com/libAtoms/matscipy
#
# Copyright (2019) Johannes Hoermann, University of Freiburg
#
# This program is free software: you can redistribut... | 10,487 | 38.577358 | 91 | py |
matscipy | matscipy-master/matscipy/cli/electrochemistry/__init__.py | # ======================================================================
# matscipy - Python materials science tools
# https://github.com/libAtoms/matscipy
#
# Copyright (2020) Johannes Hörmann, University of Freiburg
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the G... | 926 | 47.789474 | 72 | py |
matscipy | matscipy-master/matscipy/cli/electrochemistry/stericify.py | #!/usr/bin/env python3
# PYTHON_ARGCOMPLETE_OK
# ======================================================================
# matscipy - Python materials science tools
# https://github.com/libAtoms/matscipy
#
# Copyright (2019) Johannes Hoermann, University of Freiburg
#
# This program is free software: you can redistribut... | 15,150 | 38.048969 | 112 | py |
matscipy | matscipy-master/matscipy/fracture_mechanics/crackpathsel.py | #
# Copyright 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Founda... | 2,974 | 27.605769 | 100 | py |
matscipy | matscipy-master/matscipy/fracture_mechanics/crack.py | #
# Copyright 2014-2015, 2017, 2021 Lars Pastewka (U. Freiburg)
# 2014-2016, 2018, 2020-2021 James Kermode (Warwick U.)
# 2015-2017 Punit Patel (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you ... | 77,061 | 34.091985 | 119 | py |
matscipy | matscipy-master/matscipy/fracture_mechanics/clusters.py | #
# Copyright 2014-2015, 2017, 2021 Lars Pastewka (U. Freiburg)
# 2014-2015, 2020 James Kermode (Warwick U.)
# 2020 Petr Grigorev (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribu... | 4,414 | 32.195489 | 88 | py |
matscipy | matscipy-master/matscipy/fracture_mechanics/__init__.py | """
Calculation of continuum linear elastic displacement fields near crack tips,
including support for anisotropy in the elastic response.
"""
| 143 | 27.8 | 76 | py |
matscipy | matscipy-master/matscipy/fracture_mechanics/idealbrittlesolid.py | #
# Copyright 2015, 2017, 2020-2021 Lars Pastewka (U. Freiburg)
# 2014-2015, 2017-2018 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the term... | 12,355 | 32.215054 | 116 | py |
matscipy | matscipy-master/matscipy/fracture_mechanics/energy_release.py | #
# Copyright 2014-2015, 2021 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Sof... | 3,951 | 32.210084 | 79 | py |
matscipy | matscipy-master/matscipy/io/lammpsdata.py | #
# Copyright 2022 Lucas Frérot (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Founda... | 11,364 | 32.724036 | 78 | py |
matscipy | matscipy-master/matscipy/io/metis.py | #
# Copyright 2014-2016, 2021 Lars Pastewka (U. Freiburg)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General P... | 1,511 | 28.076923 | 71 | py |
matscipy | matscipy-master/matscipy/io/__init__.py | #
# Copyright 2014-2016, 2021 Lars Pastewka (U. Freiburg)
# 2015-2016 Adrien Gola (KIT)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
#... | 948 | 38.541667 | 71 | py |
matscipy | matscipy-master/matscipy/io/tbl.py | #
# Copyright 2014-2017, 2021 Lars Pastewka (U. Freiburg)
# 2015 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General P... | 4,171 | 31.850394 | 95 | py |
matscipy | matscipy-master/matscipy/io/opls.py | #
# Copyright 2016-2017, 2020 Andreas Klemenz (Fraunhofer IWM)
# 2020 Thomas Reichenbach (Fraunhofer IWM)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the... | 30,688 | 36.06401 | 146 | py |
matscipy | matscipy-master/matscipy/calculators/supercell_calculator.py | #
# Copyright 2017 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Found... | 1,783 | 30.298246 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/fitting.py | #
# Copyright 2015, 2021 Lars Pastewka (U. Freiburg)
# 2015-2016 Adrien Gola (KIT)
# 2015 gola@cmsserv.iam-cms.kit.edu
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it... | 43,316 | 31.915653 | 152 | py |
matscipy | matscipy-master/matscipy/calculators/__init__.py | #
# Copyright 2014-2015, 2017, 2021 Lars Pastewka (U. Freiburg)
# 2018-2021 Jan Griesser (U. Freiburg)
# 2020 Jonas Oldenstaedt (U. Freiburg)
# 2015 Adrien Gola (KIT)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://gith... | 1,308 | 33.447368 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/calculator.py | #
# Copyright 2021 Jan Griesser (U. Freiburg)
# 2021 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Licen... | 14,926 | 34.796163 | 228 | py |
matscipy | matscipy-master/matscipy/calculators/pair_potential/__init__.py | #
# Copyright 2014-2015, 2017, 2021 Lars Pastewka (U. Freiburg)
# 2018-2019 Jan Griesser (U. Freiburg)
# 2015 Adrien Gola (KIT)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free... | 1,060 | 41.44 | 124 | py |
matscipy | matscipy-master/matscipy/calculators/pair_potential/calculator.py | #
# Copyright 2018-2019, 2021 Jan Griesser (U. Freiburg)
# 2021 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General P... | 15,872 | 29.349904 | 117 | py |
matscipy | matscipy-master/matscipy/calculators/ewald/__init__.py | #
# Copyright 2014-2015, 2017, 2021 Lars Pastewka (U. Freiburg)
# 2018-2019 Jan Griesser (U. Freiburg)
# 2015 Adrien Gola (KIT)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free... | 965 | 37.64 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/ewald/calculator.py | #
# Copyright 2021 Jan Griesser (U. Freiburg)
# 2021 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Licen... | 22,564 | 29.742507 | 93 | py |
matscipy | matscipy-master/matscipy/calculators/polydisperse/__init__.py | #
# Copyright 2014-2015, 2017, 2021 Lars Pastewka (U. Freiburg)
# 2018-2020 Jan Griesser (U. Freiburg)
# 2015 Adrien Gola (KIT)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free... | 998 | 38.96 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/polydisperse/calculator.py | #
# Copyright 2020-2021 Jan Griesser (U. Freiburg)
# 2020 griesserj@fp-10-126-132-144.eduroam-fp.privat
# 2020 Arnaud Allera (U. Lyon 1)
# 2014 Lars Pastewka (U. Freiburg)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https:/... | 10,746 | 32.689655 | 145 | py |
matscipy | matscipy-master/matscipy/calculators/committee/utils.py | import numpy as np
import ase.io
def subsample(samples, output_files, num_subsets, num_subset_samples, keep_isolated_atoms=True):
"""
Draw sub-samples (without replacement) from given configurations and write to files.
Parameter:
----------
samples: list(Atoms)
List of configurations to d... | 3,554 | 39.862069 | 133 | py |
matscipy | matscipy-master/matscipy/calculators/committee/log.py | import os
import logging
def create_logger(name, level='warning', log_file=None):
"""
Create a logger with defined level, and some nice formatter and handler.
Parameter:
----------
name: str
Name of the logger.
level: str, optional default='warning'
The sensitivity level of b... | 1,924 | 28.166667 | 92 | py |
matscipy | matscipy-master/matscipy/calculators/committee/__init__.py | """Implements the Committee (of Models) approach."""
from .committee import CommitteeUncertainty, Committee, CommitteeMember
from .log import set_logging
from .utils import subsample
| 184 | 29.833333 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/committee/committee.py | import warnings
import logging
from pathlib import Path
from collections import Counter
import numpy as np
import ase.io
from ase.calculators.calculator import Calculator, all_changes
logger = logging.getLogger('matscipy.calculators.committee')
class CommitteeUncertainty(Calculator):
"""
Calculator for a c... | 17,234 | 36.386117 | 126 | py |
matscipy | matscipy-master/matscipy/calculators/manybody/newmb.py | """Manybody calculator definition."""
import numpy as np
from abc import ABC, abstractmethod
from collections import defaultdict
from itertools import combinations_with_replacement
from typing import Mapping
from scipy.sparse import bsr_matrix
from ...calculators.calculator import MatscipyCalculator
from ...neighbour... | 23,461 | 33.101744 | 101 | py |
matscipy | matscipy-master/matscipy/calculators/manybody/potentials.py | #
# Copyright 2022 Lucas Frérot (U. Freiburg)
# 2022 Jan Griesser (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Licens... | 48,728 | 35.015521 | 152 | py |
matscipy | matscipy-master/matscipy/calculators/manybody/__init__.py | #
# Copyright 2014-2015, 2017, 2020-2021 Lars Pastewka (U. Freiburg)
# 2018-2021 Jan Griesser (U. Freiburg)
# 2020 Jonas Oldenstaedt (U. Freiburg)
# 2015 Adrien Gola (KIT)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https:/... | 1,091 | 39.444444 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/manybody/calculator.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2021 Jan Griesser (U. Freiburg)
# 2020-2021 Jonas Oldenstaedt (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modif... | 29,894 | 36.746212 | 117 | py |
matscipy | matscipy-master/matscipy/calculators/manybody/explicit_forms/harmonic.py | #
# Copyright 2022 Lucas Frérot (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Founda... | 14,226 | 42.243161 | 468 | py |
matscipy | matscipy-master/matscipy/calculators/manybody/explicit_forms/kumagai.py | #
# Copyright 2021 Jan Griesser (U. Freiburg)
# 2021 Lars Pastewka (U. Freiburg)
# 2021 griesserj@griesserjs-MacBook-Pro.local
# 2020-2021 Jonas Oldenstaedt (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This progra... | 10,028 | 39.934694 | 143 | py |
matscipy | matscipy-master/matscipy/calculators/manybody/explicit_forms/tersoff_brenner.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2021 Jan Griesser (U. Freiburg)
# 2021 griesserj@griesserjs-MacBook-Pro.local
# 2020 Jonas Oldenstaedt (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is ... | 26,429 | 43.345638 | 169 | py |
matscipy | matscipy-master/matscipy/calculators/manybody/explicit_forms/__init__.py | #
# Copyright 2014-2015, 2017, 2020-2021 Lars Pastewka (U. Freiburg)
# 2018-2021 Jan Griesser (U. Freiburg)
# 2020 Jonas Oldenstaedt (U. Freiburg)
# 2015 Adrien Gola (KIT)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https:/... | 1,181 | 39.758621 | 72 | py |
matscipy | matscipy-master/matscipy/calculators/manybody/explicit_forms/stillinger_weber.py | #
# Copyright 2021 Jan Griesser (U. Freiburg)
# 2021 Lars Pastewka (U. Freiburg)
# 2021 griesserj@griesserjs-MacBook-Pro.local
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or mod... | 8,961 | 37.796537 | 139 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/qm_cluster.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 4,297 | 38.796296 | 89 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/__init__.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 955 | 38.833333 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/cluster_data.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 1,913 | 32.578947 | 91 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/calculator.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 29,044 | 39.509066 | 107 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/mcfm_parallel/mcfm_parallel_control.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 4,636 | 36.096 | 99 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/mcfm_parallel/__init__.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 863 | 38.272727 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/mcfm_parallel/mcfm_parallel_worker.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 4,424 | 35.570248 | 90 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/neighbour_list_mcfm/neighbour_list_base.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 1,886 | 28.030769 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/neighbour_list_mcfm/__init__.py | 0 | 0 | 0 | py | |
matscipy | matscipy-master/matscipy/calculators/mcfm/neighbour_list_mcfm/neighbour_list_mcfm.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 golebiowski.j@gmail.com
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or m... | 5,247 | 31.196319 | 84 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/qm_cluster_tools/qm_clustering_tool.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 21,592 | 42.0998 | 106 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/qm_cluster_tools/qm_flagging_tool.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 11,970 | 36.409375 | 107 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/qm_cluster_tools/__init__.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 864 | 36.608696 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/mcfm/qm_cluster_tools/base_qm_cluster_tool.py | #
# Copyright 2021 Lars Pastewka (U. Freiburg)
# 2018 Jacek Golebiowski (Imperial College London)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gen... | 3,112 | 31.092784 | 76 | py |
matscipy | matscipy-master/matscipy/calculators/eam/__init__.py | #
# Copyright 2014-2015, 2017, 2021 Lars Pastewka (U. Freiburg)
# 2020 Wolfram G. Nöhring (U. Freiburg)
# 2015 Adrien Gola (KIT)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is fre... | 1,095 | 38.142857 | 71 | py |
matscipy | matscipy-master/matscipy/calculators/eam/io.py | #
# Copyright 2015, 2021 Lars Pastewka (U. Freiburg)
# 2019-2020 Wolfram G. Nöhring (U. Freiburg)
# 2015 Adrien Gola (KIT)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
... | 28,065 | 44.194847 | 169 | py |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.