repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1
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prospector | prospector-master/prospect/utils/prospect_args.py | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""prospect_args.py - methods to get a default argument parser for prospector.
"""
import argparse
__all__ = ["get_parser", "show_default_args"]
def show_default_args():
parser = get_parser()
parser.print_help()
def get_parser(fitters=["optimize", "emcee", "d... | 6,814 | 42.407643 | 106 | py |
prospector | prospector-master/prospect/utils/__init__.py | 0 | 0 | 0 | py | |
prospector | prospector-master/prospect/utils/smoothing.py | # Spectral smoothing functionality
# To do:
# 3) add extra zero-padding for FFT algorithms so they don't go funky at the
# edges?
import numpy as np
from numpy.fft import fft, ifft, fftfreq, rfftfreq
__all__ = ["smoothspec", "smooth_wave", "smooth_vel", "smooth_lsf",
"smooth_wave_fft", "smooth_vel_fft",... | 24,665 | 36.259819 | 95 | py |
prospector | prospector-master/prospect/likelihood/likelihood.py | import time, sys, os
import numpy as np
from scipy.linalg import LinAlgError
__all__ = ["lnlike_spec", "lnlike_phot", "chi_spec", "chi_phot", "write_log"]
def lnlike_spec(spec_mu, obs=None, spec_noise=None, f_outlier_spec=0.0, **vectors):
"""Calculate the likelihood of the spectroscopic data given the
... | 7,824 | 35.737089 | 100 | py |
prospector | prospector-master/prospect/likelihood/kernels.py | import numpy as np
__all__ = ["Kernel", "Uncorrelated", "ExpSquared", "Matern", "PhotoCal"]
class Kernel(object):
def __init__(self, parnames=[], name=''):
"""
:param parnames:
A list of names of the kernel params, used to alias the intrinsic
parameter names. This way di... | 3,359 | 29.545455 | 83 | py |
prospector | prospector-master/prospect/likelihood/__init__.py | from .likelihood import *
from .noise_model import *
__all__ = ["lnlike_spec", "lnlike_phot", "NoiseModel"]
| 110 | 17.5 | 54 | py |
prospector | prospector-master/prospect/likelihood/noise_model.py | import numpy as np
from scipy.linalg import cho_factor, cho_solve
__all__ = ["NoiseModel"]
class NoiseModel(object):
def __init__(self, metric_name='', mask_name='mask', kernels=[],
weight_by=[]):
assert len(kernels) == len(weight_by)
self.kernels = kernels
self.weight_n... | 3,071 | 36.925926 | 80 | py |
prospector | prospector-master/scripts/prospector_parse.py | import sys
from copy import deepcopy
import numpy as np
from prospect.utils import prospect_args
from prospect.fitting import fit_model
from prospect.io import write_results as writer
def build_model(zred=0.0, add_neb=True, **extras):
"""Instantiate and return a ProspectorParams model subclass (SedModel). In
... | 6,109 | 32.571429 | 87 | py |
prospector | prospector-master/scripts/prospector_restart.py | #!/usr/local/bin/python
import time, sys, os
import numpy as np
np.errstate(invalid='ignore')
from prospect.models import model_setup
from prospect.io import write_results
from prospect.io import read_results as pr
from prospect import fitting
from prospect.likelihood import lnlike_spec, lnlike_phot, write_log, chi_s... | 7,080 | 30.471111 | 87 | py |
prospector | prospector-master/scripts/prospector_dynesty.py | import time, sys, os
import numpy as np
np.errstate(invalid='ignore')
from prospect.models import model_setup
from prospect.io import write_results
from prospect import fitting
from prospect.likelihood import lnlike_spec, lnlike_phot, write_log
from dynesty.dynamicsampler import stopping_function, weight_function, _kl... | 5,286 | 29.738372 | 90 | py |
prospector | prospector-master/scripts/prospector.py | #!/usr/local/bin/python
import time, sys, os
import numpy as np
np.errstate(invalid='ignore')
from prospect.models import model_setup
from prospect.io import write_results
from prospect import fitting
from prospect.likelihood import lnlike_spec, lnlike_phot, write_log, chi_spec, chi_phot
# --------------
# Read com... | 9,248 | 32.632727 | 97 | py |
prospector | prospector-master/demo/demo_mock_params.py | import time, sys
from copy import deepcopy
import numpy as np
from sedpy.observate import load_filters
from prospect import prospect_args
from prospect.fitting import fit_model
from prospect.io import write_results as writer
# Here we are going to put together some filter names
# All these filters are available in s... | 10,099 | 35.071429 | 102 | py |
prospector | prospector-master/demo/demo_params.py | import time, sys
import numpy as np
from sedpy.observate import load_filters
from prospect import prospect_args
from prospect.fitting import fit_model
from prospect.io import write_results as writer
# --------------
# RUN_PARAMS
# When running as a script with argparsing, these are ignored. Kept here for backwards... | 11,700 | 36.503205 | 102 | py |
prospector | prospector-master/demo/timing.py | from copy import deepcopy
import timeit, time, sys
import numpy as np
import fsps
from prospect.sources import FastStepBasis, CSPBasis
sps = fsps.StellarPopulation(zcontinuous=1)
libs = [l.upper() for l in sps.libraries]
def get_model(sps, **kwargs):
try:
# For SSPBasis derived objects
sps.updat... | 3,522 | 29.634783 | 102 | py |
prospector | prospector-master/demo/mpi_hello_world.py | # This is a short script to test the MPI implementation with the pattern used
# by Prospector. However, try/except blocks are minimized to enable more
# useful error messages, and the code is simple enough to *only* test the MPI
# implementation.
# Invoke with:
# mpirun -np 4 python mpi_hello_world.py
import numpy a... | 760 | 24.366667 | 77 | py |
prospector | prospector-master/misc/fdot.py | # script to calculate the fractional change in SSP flux as a function
# of time.
import matplotlib.pyplot as pl
import numpy as np
import fsps
sps = fsps.StellarPopulation(zcontinuous=0)
# compile all metallicities
for i, z in enumerate(sps.zlegend):
w, s = sps.get_spectrum(zmet=i+1)
spec, mass, lbol = sps.all_ssp... | 717 | 22.16129 | 69 | py |
prospector | prospector-master/misc/timings_pyfsps.py | #compare a lookup table of spectra at ages and metallicities to
#calls to fsps.sps.get_spectrum() for different metallicities
import time, os, subprocess, re, sys
import numpy as np
#import matplotlib.pyplot as pl
import fsps
from prospect import sources as sps_basis
from prospect.models import sedmodel
def run_comma... | 4,274 | 29.319149 | 85 | py |
prospector | prospector-master/misc/ztest.py | import numpy as np
import matplotlib.pyplot as pl
import fsps
ztype = [False, 0, 1, 2]
zdlabel= ['ind', 'cont', 'MDF']
sps = [fsps.StellarPopulation(zcontinuous=z) for z in ztype]
tage = 1.0
p = 3.0
zmet = 3
sfig, sax = pl.subplots()
rfig, rax = pl.subplots()
sax.set_xlim(1e3, 2e4)
rax.set_xlim(1e3, 2e4)
rax.set_xscal... | 809 | 22.823529 | 89 | py |
prospector | prospector-master/misc/timing_smoothspec.py | import numpy as np
import matplotlib.pyplot as pl
import fsps, time, sys
from sedpy.observate import vac2air, lsf_broaden
from scipy import sparse
def lsf_broaden_sparse(wave, spec, lsf=None, outwave=None,
return_kernel=False, fwhm=False, dyr = 1e-4, **kwargs):
"""Broaden a spectrum using a wa... | 3,077 | 30.731959 | 86 | py |
prospector | prospector-master/misc/test_compsp.py | # Test the analytic full SFR integrals implemented in SSPBasis against the
# COMPSP implementations of same.
import sys, os, time
import numpy as np
import matplotlib.pyplot as pl
import fsps
from prospect.sources import CompositeSFH
sfhtype = {1:'tau', 4: 'delaytau', 5: 'simha'}
compute_vega_mags = False
zcontinuo... | 10,770 | 37.605735 | 121 | py |
prospector | prospector-master/misc/test_stepsfh.py | import matplotlib.pyplot as pl
import numpy as np
from bsfh.sources import ssp_basis
sps = ssp_basis.StepSFHBasis(interp_type='logarithmic')
nbin = 7
ages = np.linspace(7, 10, nbin+1)
params = {'agebins': np.array([ages[:-1], ages[1:]]).T,
'mass': 10**ages[1:] - 10**ages[:-1] }
sps.update(**params)
w = s... | 651 | 22.285714 | 55 | py |
prospector | prospector-master/misc/diagnostics.py | #Take the results from MCMC fitting of clusters
# and make diagnostic plots, or derive predictions for
# observables, etc..
import numpy as np
import matplotlib.pyplot as pl
import triangle
import pickle
try:
from cStringIO import StringIO
except ImportError:
from StringIO import StringIO
def diagnostic_plot... | 15,450 | 35.875895 | 116 | py |
prospector | prospector-master/misc/test_sft.py | import sys, os, time
import numpy as np
import matplotlib.pyplot as pl
import fsps
from prospect.sources import CompositeSFH
from sedpy import observate
sfhtype = {1:'tau', 4: 'delaytau', 5: 'simha'}
# build FSPS and Prospector sps objects
zcontinuous = 1
sps = fsps.StellarPopulation(zcontinuous=zcontinuous)
tres = n... | 3,383 | 32.84 | 99 | py |
prospector | prospector-master/doc/conf.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# prospector documentation build configuration file, created by
# sphinx-quickstart on Sun Apr 8 16:26:26 2018.
#
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to th... | 5,534 | 30.99422 | 80 | py |
Efficient-FedRec | Efficient-FedRec-main/src/main.py | import argparse
from pathlib import Path
from tqdm import tqdm
import random
import wandb
import numpy as np
import os
import pickle
import torch
from torch.utils.data import DataLoader
import torch.optim as optim
from agg import Aggregator
from model import Model, TextEncoder, UserEncoder
from data import TrainData... | 13,768 | 33.946701 | 131 | py |
Efficient-FedRec | Efficient-FedRec-main/src/agg.py | import numpy as np
import torch
from torch.utils.data import Dataset, DataLoader
from model import TextEncoder, UserEncoder
import torch.optim as optim
from data import NewsPartDataset
class NewsUpdatorDataset(Dataset):
def __init__(self, news_index, news_ids, news_grads):
self.news_index = news_index
... | 4,402 | 34.224 | 90 | py |
Efficient-FedRec | Efficient-FedRec-main/src/model.py | import torch
from torch import nn
import torch.nn.functional as F
from transformers import BertModel
import numpy as np
class ScaledDotProductAttention(nn.Module):
def __init__(self, d_k):
super(ScaledDotProductAttention, self).__init__()
self.d_k = d_k
def forward(self, Q, K, V, attn_mask=No... | 5,484 | 37.356643 | 101 | py |
Efficient-FedRec | Efficient-FedRec-main/src/data.py | import random
import numpy as np
from torch.utils.data import Dataset, DataLoader
def newsample(nnn, ratio):
if ratio > len(nnn):
return nnn + ["<unk>"] * (ratio - len(nnn))
else:
return random.sample(nnn, ratio)
class TrainDataset(Dataset):
def __init__(self, args, samples, users, user_i... | 2,760 | 28.063158 | 99 | py |
Efficient-FedRec | Efficient-FedRec-main/src/metrics.py | import numpy as np
from tqdm import tqdm
from sklearn.metrics import roc_auc_score
def dcg_score(y_true, y_score, k=10):
order = np.argsort(y_score)[::-1]
y_true = np.take(y_true, order[:k])
gains = 2 ** y_true - 1
discounts = np.log2(np.arange(len(y_true)) + 2)
return np.sum(gains / discounts)
d... | 1,488 | 30.680851 | 63 | py |
Efficient-FedRec | Efficient-FedRec-main/preprocess/adressa_raw.py | # This script is used to construct training, validation and test dataset of adressa.
# We follow existing works[1][2] to split the dataset.
# [1]
# [2]
import json
import pickle
import argparse
import numpy as np
from tqdm import tqdm
from pathlib import Path
from collections import defaultdict
from sklearn.model... | 7,496 | 32.172566 | 88 | py |
Efficient-FedRec | Efficient-FedRec-main/preprocess/user_process.py | from pathlib import Path
from tqdm import tqdm
from collections import defaultdict
import os
import pickle
import argparse
def parse_args():
parser = argparse.ArgumentParser()
parser.add_argument(
"--raw_path",
type=str,
default="../raw/",
help="path to raw mind dataset or parse... | 4,275 | 32.669291 | 81 | py |
Efficient-FedRec | Efficient-FedRec-main/preprocess/news_process.py | from transformers import BertTokenizer
from pathlib import Path
from tqdm import tqdm
import numpy as np
import os
import pickle
import argparse
# config
def parse_args():
parser = argparse.ArgumentParser()
parser.add_argument(
"--raw_path",
type=str,
default="../raw/",
help="pa... | 3,844 | 29.515873 | 86 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-setuptestsuite-test.py | #!/usr/bin/env python
#
# Copyright 2019, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 2,265 | 40.2 | 78 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-failfast-unittest.py | #!/usr/bin/env python
#
# Copyright 2020 Google Inc. All Rights Reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of... | 14,915 | 35.291971 | 80 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/gtest_xml_outfiles_test.py | #!/usr/bin/env python
#
# Copyright 2008, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 5,415 | 38.823529 | 119 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-color-test.py | #!/usr/bin/env python
#
# Copyright 2008, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 4,896 | 37.257813 | 76 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-shuffle-test.py | #!/usr/bin/env python
#
# Copyright 2009 Google Inc. All Rights Reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of... | 12,539 | 37.703704 | 79 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/gtest_skip_environment_check_output_test.py | #!/usr/bin/env python
#
# Copyright 2019 Google LLC. All Rights Reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list o... | 2,230 | 39.563636 | 74 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/gtest_xml_test_utils.py | # Copyright 2006, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the f... | 9,327 | 46.111111 | 79 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-global-environment-unittest.py | # Copyright 2021 Google Inc. All Rights Reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the foll... | 5,243 | 39.030534 | 80 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-catch-exceptions-test.py | #!/usr/bin/env python
#
# Copyright 2010 Google Inc. All Rights Reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list o... | 10,023 | 41.295359 | 79 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/gtest_skip_check_output_test.py | #!/usr/bin/env python
#
# Copyright 2019 Google LLC. All Rights Reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list o... | 2,411 | 39.2 | 79 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/gtest_test_utils.py | # Copyright 2006, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the f... | 8,407 | 31.84375 | 79 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-json-output-unittest.py | #!/usr/bin/env python
# Copyright 2018, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list o... | 24,483 | 27.838634 | 80 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/gtest_testbridge_test.py | #!/usr/bin/env python
#
# Copyright 2018 Google LLC. All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of... | 2,496 | 38.015625 | 78 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/gtest_json_test_utils.py | # Copyright 2018, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the f... | 2,411 | 38.540984 | 79 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-uninitialized-test.py | #!/usr/bin/env python
#
# Copyright 2008, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 2,495 | 35.705882 | 82 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-filter-unittest.py | #!/usr/bin/env python
#
# Copyright 2005 Google Inc. All Rights Reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of... | 21,466 | 32.542188 | 80 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/gtest_help_test.py | #!/usr/bin/env python
#
# Copyright 2009, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 6,114 | 33.942857 | 75 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-output-test.py | #!/usr/bin/env python
#
# Copyright 2008, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 12,648 | 35.45245 | 81 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-json-outfiles-test.py | #!/usr/bin/env python
# Copyright 2018, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list o... | 5,705 | 28.71875 | 80 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/gtest_list_output_unittest.py | #!/usr/bin/env python
#
# Copyright 2006, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 9,502 | 32.111498 | 98 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-list-tests-unittest.py | #!/usr/bin/env python
#
# Copyright 2006, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 6,543 | 30.76699 | 84 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-param-test-invalid-name1-test.py | #!/usr/bin/env python
#
# Copyright 2015 Google Inc. All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of... | 2,400 | 36.515625 | 77 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-param-test-invalid-name2-test.py | #!/usr/bin/env python
#
# Copyright 2015 Google Inc. All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of... | 2,355 | 36.396825 | 77 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-break-on-failure-unittest.py | #!/usr/bin/env python
#
# Copyright 2006, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 7,322 | 34.038278 | 79 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-throw-on-failure-test.py | #!/usr/bin/env python
#
# Copyright 2009, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 5,658 | 32.485207 | 79 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/googletest-env-var-test.py | #!/usr/bin/env python
#
# Copyright 2008, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 4,173 | 33.495868 | 79 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googletest/test/gtest_xml_output_unittest.py | #!/usr/bin/env python
#
# Copyright 2006, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 20,639 | 48.615385 | 225 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googlemock/test/gmock_leak_test.py | #!/usr/bin/env python
#
# Copyright 2009, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 4,357 | 40.504762 | 73 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googlemock/test/gmock_test_utils.py | # Copyright 2006, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the f... | 3,218 | 32.185567 | 79 | py |
rocm_smi_lib | rocm_smi_lib-master/tests/rocm_smi_test/gtest/googlemock/test/gmock_output_test.py | #!/usr/bin/env python
#
# Copyright 2008, Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list... | 6,175 | 32.565217 | 80 | py |
rocm_smi_lib | rocm_smi_lib-master/python_smi_tools/rsmiBindings.py | #!/usr/bin/env python3
"""ROCm_SMI_LIB CLI Tool Python Bindings"""
# TODO: Get most (or all) of these from rocm_smi.h to avoid mismatches and redundancy
from __future__ import print_function
import ctypes.util
from ctypes import *
from enum import Enum
import os
# Use ROCm installation path if running from standard ... | 20,511 | 31 | 105 | py |
rocm_smi_lib | rocm_smi_lib-master/python_smi_tools/rocm_smi.py | #!/usr/bin/env python3
"""ROCm_SMI_LIB CLI Tool
This tool acts as a command line interface for manipulating
and monitoring the amdgpu kernel, and is intended to replace
and deprecate the existing rocm_smi.py CLI tool.
It uses Ctypes to call the rocm_smi_lib API.
Recommended: At least one AMD GPU with ROCm driver insta... | 161,265 | 41.889894 | 163 | py |
darkriscv | darkriscv-master/sim/trace.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
from vcdvcd import VCDVCD
import subprocess
import sys
import getopt
import argparse
class Error(Exception):
"""addr2line exception."""
def __init__(self, str):
Exception.__init__(self, str)
class addr2line:
def __init__(self, binary, addr2line):
... | 4,927 | 32.073826 | 137 | py |
dive | dive-main/.github/scripts/coverage.py | #!/usr/bin/env python3
import subprocess
import sys
import shlex
class bcolors:
HEADER = '\033[95m'
OKBLUE = '\033[94m'
OKCYAN = '\033[96m'
OKGREEN = '\033[92m'
WARNING = '\033[93m'
FAIL = '\033[91m'
ENDC = '\033[0m'
BOLD = '\033[1m'
UNDERLINE = '\033[4m'
if len(sys.argv) < 3:
... | 861 | 22.297297 | 96 | py |
Guava-disease-detection | Guava-disease-detection-main/test.py | 0 | 0 | 0 | py | |
Guava-disease-detection | Guava-disease-detection-main/configuration.py | import os
if__name__=="__main__":
print("in progress") | 60 | 11.2 | 24 | py |
Guava-disease-detection | Guava-disease-detection-main/predict.py | import os
if__name__=="__main__":
print("in progress") | 60 | 11.2 | 24 | py |
Guava-disease-detection | Guava-disease-detection-main/train.py | import os
if__name__=="__main__":
print("in progress") | 60 | 11.2 | 24 | py |
Guava-disease-detection | Guava-disease-detection-main/datasets/dataloader.py | import os
if__name__=="__main__":
print("in progress") | 60 | 11.2 | 24 | py |
Guava-disease-detection | Guava-disease-detection-main/datasets/utils.py | import os
if__name__=="__main__":
print("in progress") | 60 | 11.2 | 24 | py |
Guava-disease-detection | Guava-disease-detection-main/optimization/conversion/run_tflite_model.py | import numpy as np
import tensorflow as tf
tflite_model_path = 'model.tflite'
# Load the TFLite model and allocate tensors
interpreter = tf.lite.Interpreter(model_path=tflite_model_path)
interpreter.allocate_tensors()
# Get input and output tensors
input_details = interpreter.get_input_details()
output_details = inte... | 778 | 32.869565 | 77 | py |
Guava-disease-detection | Guava-disease-detection-main/optimization/conversion/onnx_to_tf.py | from onnx_tf.backend import prepare
import onnx
onnx_model_path = 'model.onnx'
tf_model_path = 'model_tf'
onnx_model = onnx.load(onnx_model_path)
tf_rep = prepare(onnx_model)
tf_rep.export_graph(tf_model_path) | 211 | 22.555556 | 39 | py |
Guava-disease-detection | Guava-disease-detection-main/optimization/conversion/tf_to_tflite.py | import tensorflow as tf
saved_model_dir = 'model_tf'
tflite_model_path = 'model.tflite'
# Convert the model
converter = tf.lite.TFLiteConverter.from_saved_model(saved_model_dir)
tflite_model = converter.convert()
# Save the model
with open(tflite_model_path, 'wb') as f:
f.write(tflite_model) | 299 | 24 | 69 | py |
Guava-disease-detection | Guava-disease-detection-main/optimization/conversion/run_tf_model.py | import tensorflow as tf
tf_model_path = 'model_tf'
model = tf.saved_model.load(tf_model_path)
model.trainable = False
input_tensor = tf.random.uniform([1, 3, 640, 640])
out = model(**{'input': input_tensor})
print(out) | 222 | 19.272727 | 50 | py |
Guava-disease-detection | Guava-disease-detection-main/optimization/conversion/torch_to_onnx.py | import torch
from torchvision.models import mobilenet_v2
img_size = (640, 640)
batch_size = 1
onnx_model_path = 'model.onnx'
model = mobilenet_v2()
model.eval()
sample_input = torch.rand((batch_size, 3, *img_size))
y = model(sample_input)
torch.onnx.export(
model,
sample_input,
onnx_model_path,
ve... | 411 | 16.913043 | 53 | py |
CICDFuzzBench | CICDFuzzBench-master/tools/captain/gather_results.py | #!/usr/bin/env python3
import argparse
from collections import defaultdict
import csv
import errno
import json
import logging
from multiprocessing import Pool
import os
import shutil
import subprocess
import sys
from tempfile import mkdtemp
import pandas as pd
ddr = lambda: defaultdict(ddr)
def parse_args():
pa... | 8,163 | 31.787149 | 103 | py |
CICDFuzzBench | CICDFuzzBench-master/tools/captain/gather_detected.py | #!/usr/bin/env python3
from json import dump, load
from os import walk
if __name__ == '__main__':
detected = {}
_, _, filenames = next(walk('./workdir/poc/'))
for f in filenames:
try:
fuzzer = f[:f.index('_')]
except ValueError:
continue
bug = f[:-4][-6:]
... | 1,420 | 35.435897 | 83 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/target selection/targsel.py | #!/usr/bin/env python3
import os
import subprocess
import sys
TARGET = ''
PREFIX = ''
FUZZER_DIR = ''
COMMIT = ''
COMMITS = []
def run_cmd(command_array, **kwargs):
return subprocess.run(command_array, stdout=subprocess.DEVNULL, stderr=subprocess.DEVNULL, **kwargs)
def run_cmd_warn_msg(command, message, **kwar... | 6,250 | 33.535912 | 174 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/target selection/visualizations/identical_targets_pie.py | #!/usr/bin/python3
import plotly.graph_objects as go
from plotly.subplots import make_subplots
labels = ['Identical Targets', 'Different Targets']
libs = {'php': [32198, 50454-32198],
'openssl': [57081, 90177-57081],
'sqlite3': [0, 483-0],
'poppler': [1686, 3840... | 2,194 | 50.046512 | 134 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/target selection/visualizations/targsel_bubbles.py | #!/usr/bin/python3
import math
import sys
import plotly.graph_objects as go
prefix = './targsel/'
logfiles = ['libpng-01.log', 'libpng-03.log', 'libsndfile-01.log', 'libtiff-02.log', 'libxml2-01.log', 'openssl-01.log', 'openssl-03.log', 'php-02.log', 'poppler-02.log',
'sqlite3-02.log', 'libpng-02.log', 'libp... | 1,813 | 38.434783 | 177 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/target selection/visualizations/changed_targets_per_library.py | #!/usr/bin/python3
import plotly.graph_objects as go
prefix = './targsel/'
logfiles = ['libpng-01.log', 'libpng-03.log', 'libsndfile-01.log', 'libtiff-02.log', 'libxml2-01.log', 'openssl-01.log', 'openssl-03.log', 'php-02.log', 'poppler-02.log',
'sqlite3-02.log', 'libpng-02.log', 'libpng-04.log', 'libtiff-01... | 1,597 | 48.9375 | 177 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/target selection/visualizations/commits_processed.py | #!/usr/bin/python3
import plotly.graph_objects as go
libs = ['php', 'openssl', 'sqlite3', 'poppler', 'lua', 'libxml2', 'libsndfile', 'libpng', 'libtiff']
equal = [7821, 7847, 483, 1919, 2285, 625, 1158, 801, 241]
total = [127000, 30000, 25000, 7000, 5000, 5000, 4000, 4000, 3000]
perc = [round((equal[i]/total[i]*100),... | 1,010 | 29.636364 | 100 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/target selection/visualizations/targsel_violins.py | #!/usr/bin/python3
import plotly.graph_objects as go
prefix = './targsel/'
logfiles = ['libpng-01.log', 'libpng-03.log', 'libsndfile-01.log', 'libtiff-02.log', 'libxml2-01.log', 'openssl-01.log', 'openssl-03.log', 'php-02.log', 'poppler-02.log',
'sqlite3-02.log', 'libpng-02.log', 'libpng-04.log', 'libtiff-01... | 1,773 | 46.945946 | 177 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/target selection/visualizations/identical_targets.py | #!/usr/bin/python3
import plotly.graph_objects as go
libs = ['php', 'openssl', 'sqlite3', 'poppler', 'lua', 'libxml2', 'libsndfile', 'libpng', 'libtiff']
equal = [32198, 57081, 0, 1686, 462, 0, 472, 853, 154]
total = [50454, 90177, 483, 3840, 2285, 625, 1159, 1602, 241]
perc = [round((equal[i]/total[i]*100),2) for i ... | 1,005 | 29.484848 | 100 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/target selection/visualizations/commits_per_library.py | #!/usr/bin/python3
import plotly.graph_objects as go
libs = ['php', 'openssl', 'sqlite3', 'poppler', 'lua', 'libxml2', 'libsndfile', 'libpng', 'libtiff']
targets = [7821, 7847, 483, 1919, 2285, 625, 1158, 801, 241]
colors = ['rgb(0,128,0)', 'rgb(255,228,181)']
fig = go.Figure(data=[
go.Bar(name='Processed', x=li... | 816 | 26.233333 | 100 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/target selection/visualizations/targets_per_library.py | #!/usr/bin/python3
import plotly.graph_objects as go
libs = ['php', 'openssl', 'sqlite3', 'poppler', 'lua', 'libxml2', 'libsndfile', 'libpng', 'libtiff']
targets = [9, 12, 1, 2, 1, 1, 1, 2, 1]
colors = ['rgb(0,128,0)', 'rgb(255,228,181)']
fig = go.Figure(data=[
go.Bar(name='Processed', x=libs, y=targets, text=ta... | 784 | 25.166667 | 100 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/archive/target-selection-compare.py | import json
RUNS = [[x for x in range(16, 94 + 1)],
[x for x in range(95, 181 + 1)],
[x for x in range(183, 269 + 1)],
[x for x in range(271, 356 + 1)],
[x for x in range(358, 444 + 1)],
[x for x in range(446, 532 + 1)],
[x for x in range(534, 620 + 1)],
[x for x... | 4,153 | 34.810345 | 120 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/archive/target-selection-visualize.py | def bar_equal_hashes():
import plotly.graph_objects as go
runs = [x for x in range(1, 13)]
equal = [819, 924, 744, 891, 834, 594, 750, 842, 1083, 864, 846, 746]
total = [1170, 1290, 1275, 1275, 1275, 1260, 1245, 1245, 1275, 1245, 1230, 1275]
fig = go.Figure(data=[
go.Bar(name='Equal hashes... | 4,070 | 52.565789 | 113 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/archive/target-selection.py | import os
import common as c
REPO_LOCATION = f'../{c.TARGET}/'
CURRENT_COMMIT = None
def init_repo():
global CURRENT_COMMIT
c.run_cmd_disable_output(['git', '-C', REPO_LOCATION, 'reset', '--hard'])
c.run_cmd_disable_output(['git', '-C', REPO_LOCATION, 'clean', '-df'])
c.run_cmd_disable_output(['git'... | 2,426 | 43.944444 | 119 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/archive/commit-monitor.py | import os
import time
import common as c
POLL_TIME = 60 # every minute
REPO_LOCATION = f'../{c.TARGET}/'
CURRENT_COMMIT = None
def init_repo():
global CURRENT_COMMIT
c.run_cmd_disable_output(['git', '-C', REPO_LOCATION, 'reset', '--hard'])
c.run_cmd_disable_output(['git', '-C', REPO_LOCATION, 'clean', ... | 2,692 | 39.80303 | 109 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/fuzz duration/fuzz-duration.py | import json
import os
import sys
import time
import common as c
TARGET = ''
REPO_LOCATION = ''
SETUP_LOCATION = ''
PATCH_LOCATION = ''
EXPERIMENT_TYPE = 'artificial'
BUGS = []
BUGS_ACTIVE = []
DURATIONS = []
ITERATIONS = 0
BASE_COMMITS = {'libpng': 'a37d4836519517bdce6cb9d956092321eca3e73b',
'l... | 7,572 | 44.89697 | 130 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/fuzz duration/common.py | import datetime
import json
import os
import subprocess
import sys
DEFAULT_TIMEOUT = '10m'
DEFAULT_FUZZERS = '(aflplusplus honggfuzz libfuzzer)'
def log_info(entry):
print(f'[{datetime.datetime.now().strftime("%Y-%m-%d %H:%M")}] (INFO) {entry}')
def log_error(entry):
print(f'[{datetime.datetime.now().strft... | 12,444 | 45.785714 | 126 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/fuzz duration/data/bug_types.py | #!/usr/bin/python3
import json
DEBUG = False
iter = 10
runs = ['5 minutes', '10 minutes', '15 minutes', '20 minutes', '30 minutes', '1 hours', '2 hours', '4 hours', '8 hours']
libs = {'php': 15, 'openssl': 17, 'sqlite3': 15, 'poppler': 59, 'lua': 14, 'libxml2': 43, 'libpng': 106, 'libtiff': 37, 'libsndfile': 50}
bug... | 1,546 | 34.159091 | 137 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/fuzz duration/data/significance.py | #!/usr/bin/python3
import json
from scipy.stats import mannwhitneyu
from VD_A import VD_A
# User params
DEBUG = False
FUZZ_DUR_DATA = "./fuzz_dur_data"
MANN_WHITNEY = False
VARGHA_DELANEY_AND_MANN_WHITNEY = True
# Experiment values
metrics = ['reached', 'triggered', 'detected']
iter = 10
runs = ['5 minutes', '10 min... | 3,965 | 45.658824 | 135 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/fuzz duration/data/VD_A.py | import itertools as it
from bisect import bisect_left
from typing import List
import numpy as np
import pandas as pd
import scipy.stats as ss
from pandas import Categorical
def VD_A(treatment: List[float], control: List[float]):
"""
Computes Vargha and Delaney A index
A. Vargha and H. D. Delaney.
A... | 3,710 | 21.089286 | 79 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/fuzz duration/visualizations/combine_plots.py | #!/usr/bin/python3
import plotly.graph_objects as go
import random
import json
import statistics
iter = 10
runs = ['5 minutes', '10 minutes', '15 minutes', '20 minutes', '30 minutes', '1 hours', '2 hours', '4 hours', '8 hours']
libs = {'php': 15, 'openssl': 17, 'sqlite3': 15, 'poppler': 59, 'lua': 14,
'libxml... | 3,457 | 28.555556 | 120 | py |
CICDFuzzBench | CICDFuzzBench-master/experiments/fuzz duration/visualizations/fuzz-duration-visualize.py | import json
import os
import pandas as pd
import plotly.express as px
import plotly.graph_objects as go
PREFIX = '/srv'
TARGET = ''
RESULT_DIR = ''
DURATIONS = []
RUNS = []
START = []
STOP = []
# /// Experiment runs of 6 durations x 5 iterations, with seed corpora. ///
# RESULT_DIR = '../results/libxml2/artificia... | 17,338 | 47.568627 | 142 | py |
rgbmcmr | rgbmcmr-master/rgbmcmr.py | from __future__ import division, print_function
from collections import namedtuple
import numpy as np
from scipy.special import erf, erfc
import emceemr
from astropy import units as u
MINF = -np.inf
class RGBModel(emceemr.Model):
"""
Note if biasfunc is used, the sense is mag_real = mag_measured + bias
... | 11,835 | 33.011494 | 123 | py |
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