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8,700 | Gant/Gant | src/main/groovy/org/codehaus/gant/ant/Gant.java | Gant.execute | @Override public void execute() throws BuildException {
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8,701 | Gant/Gant | src/main/groovy/org/codehaus/gant/ant/Gant.java | Gant.addAlmostAll | private void addAlmostAll(final Project newProject, final Project oldProject) {
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8,702 | Gant/Gant | src/main/groovy/org/codehaus/gant/GantBuilder.java | GantBuilder.invokeMethod | @Override public Object invokeMethod(final String name, final Object arguments) {
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8,703 | pavlospt/RxIAPv3 | androidiap/src/main/java/com/pavlospt/androidiap/billing/BillingProcessor.java | BillingProcessor.checkMerchant | private boolean checkMerchant(PurchaseDataModel details) {
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8,704 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DocletUtils.java | DocletUtils.getClassName | protected static String getClassName(ProgramElementDoc doc, boolean binaryName) {
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8,705 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.getSummaryForWorkUnit | @Override
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8,706 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.getGroupNameForWorkUnit | @Override
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8,707 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.getGroupSummaryForWorkUnit | @Override
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8,708 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.getDescription | protected String getDescription(final DocWorkUnit currentWorkUnit) {
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8,709 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.addHighLevelBindings | protected void addHighLevelBindings(final DocWorkUnit workUnit)
{
workUnit.setProperty("name", workUnit.getName());
workUnit.setProperty("group", workUnit.getGroupName());
workUnit.setProperty("summary", workUnit.getSummary());
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{
workUnit.setProperty("name", workUnit.getName());
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8,710 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.addCustomBindings | protected void addCustomBindings(final DocWorkUnit currentWorkUnit) {
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8,711 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.addExtraDocsBindings | protected void addExtraDocsBindings(final DocWorkUnit currentWorkUnit)
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final List<Map<String, Object>> extraDocsData = new ArrayList<Map<String, Object>>();
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{
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8,712 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.createArgumentMap | private Map<String, List<Map<String, Object>>> createArgumentMap() {
final Map<String, List<Map<String, Object>>> args = new HashMap<String, List<Map<String, Object>>>();
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args.put("positional", new ArrayList<>());... | java | private Map<String, List<Map<String, Object>>> createArgumentMap() {
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8,713 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.sortArguments | private List<Map<String, Object>> sortArguments(final List<Map<String, Object>> unsorted) {
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return unsorted;
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8,714 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.prettyPrintValueString | private Object prettyPrintValueString(final Object value) {
if (value instanceof String) {
return value.equals("") ? "\"\"" : value;
} else {
return value.toString();
}
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8,715 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.argumentTypeString | protected String argumentTypeString(final Type type) {
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8,716 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java | DefaultDocWorkUnitHandler.docForEnumArgument | private List<Map<String, Object>> docForEnumArgument(final Class<?> enumClass) {
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final ClassDoc doc = this.getDoclet().getClassDocForClass(enumClass);
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throw new RuntimeException("Tried to get docs for enum " + enumClass + " but got null instead");
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8,717 | ReactiveX/RxJavaJoins | src/main/java/rx/observables/JoinObservable.java | JoinObservable.from | public static <T> JoinObservable<T> from(Observable<T> o) {
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8,718 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/utils/Utils.java | Utils.prettyPrintWarningMessage | private static void prettyPrintWarningMessage(final List<String> results, final String message) {
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final StringBuilder builder = new StringBuilder(line);
while (builder.length() > TEXT_WARNING_WIDTH) {
int space = getLast... | java | private static void prettyPrintWarningMessage(final List<String> results, final String message) {
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8,719 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/utils/Utils.java | Utils.getLastSpace | private static int getLastSpace(final CharSequence message, int width) {
final int length = message.length();
int stopPos = width;
int currPos = 0;
int lastSpace = -1;
boolean inEscape = false;
while (currPos < stopPos && currPos < length) {
final char c = mes... | java | private static int getLastSpace(final CharSequence message, int width) {
final int length = message.length();
int stopPos = width;
int currPos = 0;
int lastSpace = -1;
boolean inEscape = false;
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8,720 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/utils/Utils.java | Utils.dupString | public static String dupString(char c, int nCopies) {
char[] chars = new char[nCopies];
Arrays.fill(chars, c);
return new String(chars);
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char[] chars = new char[nCopies];
Arrays.fill(chars, c);
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8,721 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/utils/Utils.java | Utils.wrapParagraph | public static String wrapParagraph(final String input, final int width) {
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return input;
}
final StringBuilder out = new StringBuilder();
try (final BufferedReader bufReader = new BufferedReader(new StringReader(input))) {
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}
final StringBuilder out = new StringBuilder();
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8,722 | michaelquigley/zabbixj | zabbixj-core/src/main/java/com/quigley/zabbixj/agent/passive/ListenerThread.java | ListenerThread.run | public void run() {
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log.debug("ListenerThread Starting.");
}
while(running) {
try {
Socket clientSocket = serverSocket.accept();
WorkerThread worker = new WorkerThread(container, clientSocket);
w... | java | public void run() {
if(log.isDebugEnabled()) {
log.debug("ListenerThread Starting.");
}
while(running) {
try {
Socket clientSocket = serverSocket.accept();
WorkerThread worker = new WorkerThread(container, clientSocket);
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8,723 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/utils/JVMUtils.java | JVMUtils.isConcrete | public static boolean isConcrete( Class<?> clazz ) {
return !Modifier.isAbstract(clazz.getModifiers()) &&
!Modifier.isInterface(clazz.getModifiers());
} | java | public static boolean isConcrete( Class<?> clazz ) {
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8,724 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/utils/JVMUtils.java | JVMUtils.findField | public static Field findField(Class<?> type, String fieldName ) {
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Field[] fields = type.getDeclaredFields();
for( Field field: fields ) {
if( field.getName().equals(fieldName) )
return field;
}
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Field[] fields = type.getDeclaredFields();
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return field;
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8,725 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java | DocWorkUnit.processDoc | public void processDoc(final List<Map<String, String>> featureMaps, final List<Map<String, String>> groupMaps) {
workUnitHandler.processWorkUnit(this, featureMaps, groupMaps);
} | java | public void processDoc(final List<Map<String, String>> featureMaps, final List<Map<String, String>> groupMaps) {
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8,726 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java | DocWorkUnit.getCommandLineProgramGroup | public CommandLineProgramGroup getCommandLineProgramGroup() {
if (commandLineProperties != null) {
try {
return commandLineProperties.programGroup().newInstance();
} catch (IllegalAccessException | InstantiationException e) {
logger.warn(
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8,727 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.startProcessDocs | protected boolean startProcessDocs(final RootDoc rootDoc) throws IOException {
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8,728 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.optionLength | public static int optionLength(final String option) {
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if (option.equals(DOC_TITLE_OPTION) ||
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8,729 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.processDocs | private void processDocs(final RootDoc rootDoc) {
this.rootDoc = rootDoc;
// Get a list of all the features and groups that we'll actually retain
workUnits = computeWorkUnits();
final Set<String> uniqueGroups = new HashSet<>();
final List<Map<String, String>> featureMaps = new ... | java | private void processDocs(final RootDoc rootDoc) {
this.rootDoc = rootDoc;
// Get a list of all the features and groups that we'll actually retain
workUnits = computeWorkUnits();
final Set<String> uniqueGroups = new HashSet<>();
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8,730 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.computeWorkUnits | private Set<DocWorkUnit> computeWorkUnits() {
final TreeSet<DocWorkUnit> workUnits = new TreeSet<>();
for (final ClassDoc classDoc : rootDoc.classes()) {
final Class<?> clazz = getClassForClassDoc(classDoc);
final DocumentedFeature documentedFeature = getDocumentedFeatureForClas... | java | private Set<DocWorkUnit> computeWorkUnits() {
final TreeSet<DocWorkUnit> workUnits = new TreeSet<>();
for (final ClassDoc classDoc : rootDoc.classes()) {
final Class<?> clazz = getClassForClassDoc(classDoc);
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8,731 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.includeInDocs | public boolean includeInDocs(final DocumentedFeature documentedFeature, final ClassDoc classDoc, final Class<?> clazz) {
boolean hidden = !showHiddenFeatures() && clazz.isAnnotationPresent(Hidden.class);
return !hidden && JVMUtils.isConcrete(clazz);
} | java | public boolean includeInDocs(final DocumentedFeature documentedFeature, final ClassDoc classDoc, final Class<?> clazz) {
boolean hidden = !showHiddenFeatures() && clazz.isAnnotationPresent(Hidden.class);
return !hidden && JVMUtils.isConcrete(clazz);
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8,732 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.createWorkUnit | protected DocWorkUnit createWorkUnit(
final DocumentedFeature documentedFeature,
final ClassDoc classDoc,
final Class<?> clazz)
{
return new DocWorkUnit(
new DefaultDocWorkUnitHandler(this),
documentedFeature,
classDoc,
... | java | protected DocWorkUnit createWorkUnit(
final DocumentedFeature documentedFeature,
final ClassDoc classDoc,
final Class<?> clazz)
{
return new DocWorkUnit(
new DefaultDocWorkUnitHandler(this),
documentedFeature,
classDoc,
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8,733 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.getDocumentedFeatureForClass | private DocumentedFeature getDocumentedFeatureForClass(final Class<?> clazz) {
if (clazz != null && clazz.isAnnotationPresent(DocumentedFeature.class)) {
return clazz.getAnnotation(DocumentedFeature.class);
}
else {
return null;
}
} | java | private DocumentedFeature getDocumentedFeatureForClass(final Class<?> clazz) {
if (clazz != null && clazz.isAnnotationPresent(DocumentedFeature.class)) {
return clazz.getAnnotation(DocumentedFeature.class);
}
else {
return null;
}
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8,734 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.getClassForClassDoc | private Class<? extends Object> getClassForClassDoc(final ClassDoc doc) {
try {
return DocletUtils.getClassForDoc(doc);
} catch (ClassNotFoundException e) {
// we got a classdoc for a class we can't find. Maybe in a library or something
return null;
} catch (... | java | private Class<? extends Object> getClassForClassDoc(final ClassDoc doc) {
try {
return DocletUtils.getClassForDoc(doc);
} catch (ClassNotFoundException e) {
// we got a classdoc for a class we can't find. Maybe in a library or something
return null;
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8,735 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.processIndexTemplate | protected void processIndexTemplate(
final Configuration cfg,
final List<DocWorkUnit> workUnitList,
final List<Map<String, String>> groupMaps
) throws IOException {
// Get or create a template and merge in the data
final Template template = cfg.getTemplate(getIndex... | java | protected void processIndexTemplate(
final Configuration cfg,
final List<DocWorkUnit> workUnitList,
final List<Map<String, String>> groupMaps
) throws IOException {
// Get or create a template and merge in the data
final Template template = cfg.getTemplate(getIndex... | [
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8,736 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.groupIndexMap | protected Map<String, Object> groupIndexMap(
final List<DocWorkUnit> workUnitList,
final List<Map<String, String>> groupMaps
) {
//
// root -> data -> { summary -> y, filename -> z }, etc
// -> groups -> group1, group2, etc.
Map<String, Object> root = new... | java | protected Map<String, Object> groupIndexMap(
final List<DocWorkUnit> workUnitList,
final List<Map<String, String>> groupMaps
) {
//
// root -> data -> { summary -> y, filename -> z }, etc
// -> groups -> group1, group2, etc.
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8,737 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.getGroupMap | protected Map<String, String> getGroupMap(final DocWorkUnit workUnit) {
Map<String, String> propertyMap = new HashMap<>();
propertyMap.put("id", getGroupIdFromName(workUnit.getGroupName()));
propertyMap.put("name", workUnit.getGroupName());
propertyMap.put("summary", workUnit.getGroupSum... | java | protected Map<String, String> getGroupMap(final DocWorkUnit workUnit) {
Map<String, String> propertyMap = new HashMap<>();
propertyMap.put("id", getGroupIdFromName(workUnit.getGroupName()));
propertyMap.put("name", workUnit.getGroupName());
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8,738 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.indexDataMap | public Map<String, String> indexDataMap(final DocWorkUnit workUnit) {
Map<String, String> propertyMap = new HashMap<>();
propertyMap.put("name", workUnit.getName());
propertyMap.put("summary", workUnit.getSummary());
propertyMap.put("filename", workUnit.getTargetFileName());
prop... | java | public Map<String, String> indexDataMap(final DocWorkUnit workUnit) {
Map<String, String> propertyMap = new HashMap<>();
propertyMap.put("name", workUnit.getName());
propertyMap.put("summary", workUnit.getSummary());
propertyMap.put("filename", workUnit.getTargetFileName());
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8,739 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.findWorkUnitForClass | public final DocWorkUnit findWorkUnitForClass(final Class<?> c) {
for (final DocWorkUnit workUnit : this.workUnits)
if (workUnit.getClazz().equals(c))
return workUnit;
return null;
} | java | public final DocWorkUnit findWorkUnitForClass(final Class<?> c) {
for (final DocWorkUnit workUnit : this.workUnits)
if (workUnit.getClazz().equals(c))
return workUnit;
return null;
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8,740 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java | HelpDoclet.processWorkUnitTemplate | protected void processWorkUnitTemplate(
final Configuration cfg,
final DocWorkUnit workUnit,
final List<Map<String, String>> indexByGroupMaps,
final List<Map<String, String>> featureMaps)
{
try {
// Merge data-model with template
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final Configuration cfg,
final DocWorkUnit workUnit,
final List<Map<String, String>> indexByGroupMaps,
final List<Map<String, String>> featureMaps)
{
try {
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8,741 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/TaggedArgumentParser.java | TaggedArgumentParser.preprocessTaggedOptions | public String[] preprocessTaggedOptions(final String[] argArray) {
List<String> finalArgs = new ArrayList<>(argArray.length);
Iterator<String> argIt = Arrays.asList(argArray).iterator();
while (argIt.hasNext()) {
final String arg = argIt.next();
if (isShortOptionToken(ar... | java | public String[] preprocessTaggedOptions(final String[] argArray) {
List<String> finalArgs = new ArrayList<>(argArray.length);
Iterator<String> argIt = Arrays.asList(argArray).iterator();
while (argIt.hasNext()) {
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8,742 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/TaggedArgumentParser.java | TaggedArgumentParser.replaceTaggedOption | private void replaceTaggedOption(
final String optionPrefix, // the option prefix used (short or long)
final String optionString, // the option string, minus prefix, including any tags/attributes
final Iterator<String> userArgIt, // the original, raw, un-curated i... | java | private void replaceTaggedOption(
final String optionPrefix, // the option prefix used (short or long)
final String optionString, // the option string, minus prefix, including any tags/attributes
final Iterator<String> userArgIt, // the original, raw, un-curated i... | [
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@param optionString the option string including everything but the prefix
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8,743 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/TaggedArgumentParser.java | TaggedArgumentParser.getSurrogateKeyForTaggedOption | private String getSurrogateKeyForTaggedOption(
final String rawOptionString, // the raw option string provided by the user, including the prefix and option name
final String rawArgumentValue, // the raw argument value provided by the user
final String tagString // the tag... | java | private String getSurrogateKeyForTaggedOption(
final String rawOptionString, // the raw option string provided by the user, including the prefix and option name
final String rawArgumentValue, // the raw argument value provided by the user
final String tagString // the tag... | [
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8,744 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/TaggedArgumentParser.java | TaggedArgumentParser.populateArgumentTags | public static void populateArgumentTags(final TaggedArgument taggedArg, final String longArgName, final String tagString) {
if (tagString == null) {
taggedArg.setTag(null);
taggedArg.setTagAttributes(Collections.emptyMap());
} else {
final ParsedArgument pa = ParsedAr... | java | public static void populateArgumentTags(final TaggedArgument taggedArg, final String longArgName, final String tagString) {
if (tagString == null) {
taggedArg.setTag(null);
taggedArg.setTagAttributes(Collections.emptyMap());
} else {
final ParsedArgument pa = ParsedAr... | [
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8,745 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/TaggedArgumentParser.java | TaggedArgumentParser.getDisplayString | public static String getDisplayString(final String longArgName, final TaggedArgument taggedArg) {
Utils.nonNull(longArgName);
Utils.nonNull(taggedArg);
StringBuilder sb = new StringBuilder();
sb.append(longArgName);
if (taggedArg.getTag() != null) {
sb.append(ARGUMEN... | java | public static String getDisplayString(final String longArgName, final TaggedArgument taggedArg) {
Utils.nonNull(longArgName);
Utils.nonNull(taggedArg);
StringBuilder sb = new StringBuilder();
sb.append(longArgName);
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8,746 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/BashTabCompletionDoclet.java | BashTabCompletionDoclet.optionLength | public static int optionLength(final String option) {
if (option.equals(CALLER_SCRIPT_NAME) ||
option.equals(CALLER_SCRIPT_PREFIX_LEGAL_ARGS) ||
option.equals(CALLER_SCRIPT_PREFIX_ARG_VALUE_TYPES) ||
option.equals(CALLER_SCRIPT_PREFIX_MUTEX_ARGS) ||
option.equals... | java | public static int optionLength(final String option) {
if (option.equals(CALLER_SCRIPT_NAME) ||
option.equals(CALLER_SCRIPT_PREFIX_LEGAL_ARGS) ||
option.equals(CALLER_SCRIPT_PREFIX_ARG_VALUE_TYPES) ||
option.equals(CALLER_SCRIPT_PREFIX_MUTEX_ARGS) ||
option.equals... | [
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8,747 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/help/BashTabCompletionDoclet.java | BashTabCompletionDoclet.processIndexTemplate | @Override
protected void processIndexTemplate(
final Configuration cfg,
final List<DocWorkUnit> workUnitList,
final List<Map<String, String>> groupMaps
) throws IOException {
// Create a root map for all the work units so we can access all the info we need:
fi... | java | @Override
protected void processIndexTemplate(
final Configuration cfg,
final List<DocWorkUnit> workUnitList,
final List<Map<String, String>> groupMaps
) throws IOException {
// Create a root map for all the work units so we can access all the info we need:
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8,748 | michaelquigley/zabbixj | zabbixj-core/src/main/java/com/quigley/zabbixj/agent/passive/WorkerThread.java | WorkerThread.run | public void run() {
// For log messages.
String client = socket.getInetAddress().getHostAddress();
if(log.isDebugEnabled()) {
log.info("Accepted Connection From: " + client);
}
PrintWriter out = null;
BufferedReader in = null;
try {
// S... | java | public void run() {
// For log messages.
String client = socket.getInetAddress().getHostAddress();
if(log.isDebugEnabled()) {
log.info("Accepted Connection From: " + client);
}
PrintWriter out = null;
BufferedReader in = null;
try {
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8,749 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.java | LegacyCommandLineArgumentParser.hasWebDocumentation | public boolean hasWebDocumentation(final Class<?> clazz) {
for (final String pkg : PACKAGES_WITH_WEB_DOCUMENTATION) {
if (clazz.getPackage().getName().startsWith(pkg)) {
return true;
}
}
return false;
} | java | public boolean hasWebDocumentation(final Class<?> clazz) {
for (final String pkg : PACKAGES_WITH_WEB_DOCUMENTATION) {
if (clazz.getPackage().getName().startsWith(pkg)) {
return true;
}
}
return false;
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8,750 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.java | LegacyCommandLineArgumentParser.usage | @Override
public String usage(final boolean printCommon, final boolean printHidden) {
final StringBuilder sb = new StringBuilder();
if (!printHidden) {
logger.warn("Hidden arguments are always printed in LegacyCommandLineArgumentParser");
}
if (prefix.isEmpty()) {
... | java | @Override
public String usage(final boolean printCommon, final boolean printHidden) {
final StringBuilder sb = new StringBuilder();
if (!printHidden) {
logger.warn("Hidden arguments are always printed in LegacyCommandLineArgumentParser");
}
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8,751 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.java | LegacyCommandLineArgumentParser.convertFromHtml | static String convertFromHtml(final String textToConvert) {
//LinkedHashmap since the order matters
final Map<String, String> regexps = new LinkedHashMap<>();
regexps.put("< *a *href=[\'\"](.*?)[\'\"] *>(.*?)</ *a *>","$2 ($1)");
regexps.put("< *a *href=[\'\"](.*?)[\'\"] *>(.*?)< *a */... | java | static String convertFromHtml(final String textToConvert) {
//LinkedHashmap since the order matters
final Map<String, String> regexps = new LinkedHashMap<>();
regexps.put("< *a *href=[\'\"](.*?)[\'\"] *>(.*?)</ *a *>","$2 ($1)");
regexps.put("< *a *href=[\'\"](.*?)[\'\"] *>(.*?)< *a */... | [
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8,752 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.java | LegacyCommandLineArgumentParser.parseArguments | @Override
public boolean parseArguments(final PrintStream messageStream, final String[] args) {
this.argv = args;
this.messageStream = messageStream;
if (prefix.isEmpty()) {
commandLine = callerOptions.getClass().getSimpleName();
}
for (int i = 0; i < args.length;... | java | @Override
public boolean parseArguments(final PrintStream messageStream, final String[] args) {
this.argv = args;
this.messageStream = messageStream;
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commandLine = callerOptions.getClass().getSimpleName();
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8,753 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.java | LegacyCommandLineArgumentParser.getUnderlyingType | private Class<?> getUnderlyingType(final Field field) {
if (isCollectionField(field)) {
final ParameterizedType clazz = (ParameterizedType) (field.getGenericType());
final Type[] genericTypes = clazz.getActualTypeArguments();
if (genericTypes.length != 1) {
th... | java | private Class<?> getUnderlyingType(final Field field) {
if (isCollectionField(field)) {
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final Type[] genericTypes = clazz.getActualTypeArguments();
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8,754 | ReactiveX/RxJavaJoins | src/main/java/rx/joins/Pattern9.java | Pattern9.and | public PatternN and(Observable<? extends Object> other) {
if (other == null) {
throw new NullPointerException();
}
List<Observable<? extends Object>> list = new ArrayList<Observable<? extends Object>>();
list.add(o1);
list.add(o2);
list.add(o3);
list.a... | java | public PatternN and(Observable<? extends Object> other) {
if (other == null) {
throw new NullPointerException();
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list.add(o1);
list.add(o2);
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8,755 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.java | CommandLineArgumentParser.parseArguments | @Override
public boolean parseArguments(final PrintStream messageStream, String[] args) {
final OptionSet parsedArguments;
final OptionParser parser = getOptionParser();
try {
// Preprocess the arguments before the parser sees them, replacing any tagged options
// and... | java | @Override
public boolean parseArguments(final PrintStream messageStream, String[] args) {
final OptionSet parsedArguments;
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try {
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8,756 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.java | CommandLineArgumentParser.getPluginDescriptor | @Override
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8,757 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.java | CommandLineArgumentParser.validateArgumentDefinitions | private void validateArgumentDefinitions() {
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8,758 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.java | CommandLineArgumentParser.createCommandLinePluginArgumentDefinitions | private void createCommandLinePluginArgumentDefinitions(
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requestedPlugi... | java | private void createCommandLinePluginArgumentDefinitions(
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8,759 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.java | CommandLineArgumentParser.findPluginsForDescriptor | private void findPluginsForDescriptor(final CommandLinePluginDescriptor<?> pluginDescriptor)
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8,760 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.java | CommandLineArgumentParser.isSpecialFlagSet | private boolean isSpecialFlagSet(final OptionSet parsedArguments, final String flagName){
if (parsedArguments.has(flagName)){
Object value = parsedArguments.valueOf(flagName);
return (value == null || !value.equals("false"));
} else{
return false;
}
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if (parsedArguments.has(flagName)){
Object value = parsedArguments.valueOf(flagName);
return (value == null || !value.equals("false"));
} else{
return false;
}
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8,761 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.java | CommandLineArgumentParser.validatePluginArgumentValues | private List<NamedArgumentDefinition> validatePluginArgumentValues() {
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final List<NamedArgumentDefinition> actualArgumentDefinitions = new ArrayList<>();
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8,762 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.java | CommandLineArgumentParser.expandFromExpansionFile | public List<String> expandFromExpansionFile(
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final String stringValue,
final List<String> originalValuesForPreservation) {
List<String> expandedValues = new ArrayList<>();
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List<String> expandedValues = new ArrayList<>();
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8,763 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.java | CommandLineArgumentParser.gatherArgumentValuesOfType | @Override
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final List<Pair<ArgumentDefinition, T>> argumentValues = new ArrayList<>();
// include all named and positional argument definitions
final List<ArgumentDefinition> allArgDefs = new Arr... | java | @Override
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8,764 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/ClassFinder.java | ClassFinder.scanDir | protected void scanDir(final File file, final String path) {
for ( final File child: file.listFiles() ) {
final String newPath = (path==null ? child.getName() : path + '/' + child.getName() );
if ( child.isDirectory() ) {
scanDir(child, newPath);
}
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for ( final File child: file.listFiles() ) {
final String newPath = (path==null ? child.getName() : path + '/' + child.getName() );
if ( child.isDirectory() ) {
scanDir(child, newPath);
}
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8,765 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/ClassFinder.java | ClassFinder.handleItem | protected void handleItem(final String name) {
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final String classname = toClassName(name);
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final String classname = toClassName(name);
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8,766 | ReactiveX/RxJavaJoins | src/main/java/rx/joins/operators/OperatorJoinPatterns.java | OperatorJoinPatterns.and | public static <T1, T2> Pattern2<T1, T2> and(/* this */Observable<T1> left, Observable<T2> right) {
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throw new NullPointerException("left");
}
if (right == null) {
throw new NullPointerException("right");
}
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throw new NullPointerException("left");
}
if (right == null) {
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8,767 | ReactiveX/RxJavaJoins | src/main/java/rx/joins/operators/OperatorJoinPatterns.java | OperatorJoinPatterns.then | public static <T1, R> Plan0<R> then(/* this */Observable<T1> source, Func1<T1, R> selector) {
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8,768 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.getArgumentAliases | public List<String> getArgumentAliases() {
final List<String> aliases = new ArrayList<>();
if (!getShortName().isEmpty()) {
aliases.add(getShortName());
}
if (!getFullName().isEmpty()) {
aliases.add(getFullName());
} else {
aliases.add(getUnder... | java | public List<String> getArgumentAliases() {
final List<String> aliases = new ArrayList<>();
if (!getShortName().isEmpty()) {
aliases.add(getShortName());
}
if (!getFullName().isEmpty()) {
aliases.add(getFullName());
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8,769 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.setCollectionValues | @SuppressWarnings({"rawtypes", "unchecked"})
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final CommandLineArgumentParser commandLineArgumentParser,
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{
final Collection c = (Collection) getArgumentValue... | java | @SuppressWarnings({"rawtypes", "unchecked"})
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8,770 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.setScalarValue | private void setScalarValue(
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{
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final List<String> originalValues) // Note that these might be tag surrogates
{
if (getHasBeenSet() || originalValues.size() > 1) {
throw new CommandLineException.BadArgumentValue(
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8,771 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.getArgumentUsage | public String getArgumentUsage(
final Map<String, NamedArgumentDefinition> allActualArguments,
final Collection<CommandLinePluginDescriptor<?>> pluginDescriptors,
final int argumentColumnWidth,
final int descriptionColumnWidth) {
final StringBuilder sb = new Stri... | java | public String getArgumentUsage(
final Map<String, NamedArgumentDefinition> allActualArguments,
final Collection<CommandLinePluginDescriptor<?>> pluginDescriptors,
final int argumentColumnWidth,
final int descriptionColumnWidth) {
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8,772 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.getNameValuePairForDisplay | private String getNameValuePairForDisplay(final Object value) {
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8,773 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.convertDefaultValueToString | private String convertDefaultValueToString() {
final Object initialValue = getArgumentValue();
if (initialValue != null) {
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final Object initialValue = getArgumentValue();
if (initialValue != null) {
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// treat empty collections the same as uninitialized non-collection types
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8,774 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.validateBoundsDefinitions | private void validateBoundsDefinitions() {
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8,775 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.getValuePopulatedWithTags | private Object getValuePopulatedWithTags(final String originalTag, final String stringValue)
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8,776 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.getArgumentDescription | private String getArgumentDescription(
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final Collection<CommandLinePluginDescriptor<?>> pluginDescriptors) {
final StringBuilder sb = new StringBuilder();
if (!getDocString().isEmpty()) {
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final Map<String, NamedArgumentDefinition> allActualArguments,
final Collection<CommandLinePluginDescriptor<?>> pluginDescriptors) {
final StringBuilder sb = new StringBuilder();
if (!getDocString().isEmpty()) {
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8,777 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.checkArgumentRange | private void checkArgumentRange(final Object argumentValue) {
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8,778 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.setArgumentValue | private void setArgumentValue(final Object value) {
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8,779 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java | NamedArgumentDefinition.isValueOutOfRange | private boolean isValueOutOfRange(final Double value) {
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8,780 | ReactiveX/RxJavaJoins | src/main/java/rx/joins/Pattern4.java | Pattern4.and | public <T5> Pattern5<T1, T2, T3, T4, T5> and(Observable<T5> other) {
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8,781 | michaelquigley/zabbixj | zabbixj-core/src/main/java/com/quigley/zabbixj/metrics/MetricsContainer.java | MetricsContainer.listProviders | public String[] listProviders() {
String[] providers = new String[container.size()];
int i = 0;
Iterator<String> ki = container.keySet().iterator();
while(ki.hasNext()) {
providers[i++] = (String) ki.next();
}
return providers;
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String[] providers = new String[container.size()];
int i = 0;
Iterator<String> ki = container.keySet().iterator();
while(ki.hasNext()) {
providers[i++] = (String) ki.next();
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8,782 | michaelquigley/zabbixj | zabbixj-core/src/main/java/com/quigley/zabbixj/metrics/MetricsContainer.java | MetricsContainer.addProvider | public void addProvider(String name, MetricsProvider provider) {
if(log.isInfoEnabled()) {
log.info("Adding Provider: " + provider.getClass().getName() + "=" + name);
}
container.put(name, provider);
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if(log.isInfoEnabled()) {
log.info("Adding Provider: " + provider.getClass().getName() + "=" + name);
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container.put(name, provider);
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8,783 | michaelquigley/zabbixj | zabbixj-core/src/main/java/com/quigley/zabbixj/metrics/MetricsContainer.java | MetricsContainer.getProvider | public MetricsProvider getProvider(String name) throws MetricsException {
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8,784 | michaelquigley/zabbixj | zabbixj-core/src/main/java/com/quigley/zabbixj/metrics/MetricsContainer.java | MetricsContainer.getMetric | public Object getMetric(String key) throws MetricsException {
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8,785 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/ArgumentDefinition.java | ArgumentDefinition.intializeCollection | protected void intializeCollection(final String annotationType) {
final Field field = getUnderlyingField();
final Object callerArguments = containingObject;
try {
if (field.get(containingObject) == null) {
field.set(callerArguments, field.getType().newInstance());
... | java | protected void intializeCollection(final String annotationType) {
final Field field = getUnderlyingField();
final Object callerArguments = containingObject;
try {
if (field.get(containingObject) == null) {
field.set(callerArguments, field.getType().newInstance());
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8,786 | broadinstitute/barclay | src/main/java/org/broadinstitute/barclay/argparser/ArgumentDefinition.java | ArgumentDefinition.getOptionsAsDisplayString | @SuppressWarnings({"unchecked","rawtypes"})
protected String getOptionsAsDisplayString() {
final Class<?> clazz = getUnderlyingFieldClass();
if (clazz == Boolean.class) {
return String.format("%s%s, %s%s", OPTION_DOC_PREFIX, Boolean.TRUE, Boolean.FALSE, OPTION_DOC_SUFFIX);
} else... | java | @SuppressWarnings({"unchecked","rawtypes"})
protected String getOptionsAsDisplayString() {
final Class<?> clazz = getUnderlyingFieldClass();
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return String.format("%s%s, %s%s", OPTION_DOC_PREFIX, Boolean.TRUE, Boolean.FALSE, OPTION_DOC_SUFFIX);
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8,787 | ReactiveX/RxJavaJoins | src/main/java/rx/joins/Pattern8.java | Pattern8.and | public <T9> Pattern9<T1, T2, T3, T4, T5, T6, T7, T8, T9> and(Observable<T9> other) {
if (other == null) {
throw new NullPointerException();
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return new Pattern9<T1, T2, T3, T4, T5, T6, T7, T8, T9>(o1, o2, o3, o4, o5, o6, o7, o8, other);
} | java | public <T9> Pattern9<T1, T2, T3, T4, T5, T6, T7, T8, T9> and(Observable<T9> other) {
if (other == null) {
throw new NullPointerException();
}
return new Pattern9<T1, T2, T3, T4, T5, T6, T7, T8, T9>(o1, o2, o3, o4, o5, o6, o7, o8, other);
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8,788 | ReactiveX/RxJavaJoins | src/main/java/rx/joins/Pattern5.java | Pattern5.and | public <T6> Pattern6<T1, T2, T3, T4, T5, T6> and(Observable<T6> other) {
if (other == null) {
throw new NullPointerException();
}
return new Pattern6<T1, T2, T3, T4, T5, T6>(o1, o2, o3, o4, o5, other);
} | java | public <T6> Pattern6<T1, T2, T3, T4, T5, T6> and(Observable<T6> other) {
if (other == null) {
throw new NullPointerException();
}
return new Pattern6<T1, T2, T3, T4, T5, T6>(o1, o2, o3, o4, o5, other);
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8,789 | ReactiveX/RxJavaJoins | src/main/java/rx/joins/PatternN.java | PatternN.and | public PatternN and(Observable<? extends Object> other) {
if (other == null) {
throw new NullPointerException();
}
return new PatternN(observables, other);
} | java | public PatternN and(Observable<? extends Object> other) {
if (other == null) {
throw new NullPointerException();
}
return new PatternN(observables, other);
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8,790 | Clivern/Racter | src/main/java/com/clivern/racter/senders/templates/GenericTemplate.java | GenericTemplate.setElementDefaultAction | public void setElementDefaultAction(Integer index, String type, String url, Boolean messenger_extensions, String webview_height_ratio, String fallback_url)
{
this.elements.get(index).put("default_action_type", type);
this.elements.get(index).put("default_action_url", url);
this.elements.get(... | java | public void setElementDefaultAction(Integer index, String type, String url, Boolean messenger_extensions, String webview_height_ratio, String fallback_url)
{
this.elements.get(index).put("default_action_type", type);
this.elements.get(index).put("default_action_url", url);
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@param index the element index
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8,791 | Clivern/Racter | src/main/java/com/clivern/racter/senders/templates/GenericTemplate.java | GenericTemplate.setElementButton | public void setElementButton(Integer index, String title, String type, String url, Boolean messenger_extensions, String webview_height_ratio, String fallback_url)
{
if( this.elements.get(index).containsKey("buttons") ){
HashMap<String, String> button = new HashMap<String, String>();
... | java | public void setElementButton(Integer index, String title, String type, String url, Boolean messenger_extensions, String webview_height_ratio, String fallback_url)
{
if( this.elements.get(index).containsKey("buttons") ){
HashMap<String, String> button = new HashMap<String, String>();
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@param fallback_url the fallback url | [
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8,792 | Clivern/Racter | src/main/java/com/clivern/racter/receivers/VerifyWebhook.java | VerifyWebhook.challenge | public Boolean challenge()
{
if( (this.hub_mode.equals("subscribe")) && (this.hub_verify_token.equals(this.configs.get("verify_token", ""))) ){
Logger.info("Verify token validated successfully.");
return true;
}
Logger.error("Error validating verify token.");
... | java | public Boolean challenge()
{
if( (this.hub_mode.equals("subscribe")) && (this.hub_verify_token.equals(this.configs.get("verify_token", ""))) ){
Logger.info("Verify token validated successfully.");
return true;
}
Logger.error("Error validating verify token.");
... | [
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8,793 | Clivern/Racter | src/main/java/com/clivern/racter/senders/templates/MessageTemplate.java | MessageTemplate.setQuickReply | public void setQuickReply(String content_type, String title, String payload, String image_url)
{
HashMap<String, String> quick_reply = new HashMap<String, String>();
quick_reply.put("content_type", content_type);
quick_reply.put("title", title);
quick_reply.put("payload", payload);
... | java | public void setQuickReply(String content_type, String title, String payload, String image_url)
{
HashMap<String, String> quick_reply = new HashMap<String, String>();
quick_reply.put("content_type", content_type);
quick_reply.put("title", title);
quick_reply.put("payload", payload);
... | [
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8,794 | Clivern/Racter | src/main/java/com/clivern/racter/utils/Config.java | Config.loadPropertiesFile | public Boolean loadPropertiesFile(String path) throws IOException
{
Properties prop = new Properties();
InputStream input = null;
try {
input = new FileInputStream(path);
prop.load(input);
for(String key : prop.stringPropertyNames()) {
S... | java | public Boolean loadPropertiesFile(String path) throws IOException
{
Properties prop = new Properties();
InputStream input = null;
try {
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prop.load(input);
for(String key : prop.stringPropertyNames()) {
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8,795 | Clivern/Racter | src/main/java/com/clivern/racter/utils/Config.java | Config.storePropertiesFile | public Boolean storePropertiesFile(String path) throws IOException
{
Properties prop = new Properties();
OutputStream output = null;
try {
output = new FileOutputStream(path);
for (String key : configs.keySet()){
prop.setProperty(key, configs.get(key... | java | public Boolean storePropertiesFile(String path) throws IOException
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Properties prop = new Properties();
OutputStream output = null;
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8,796 | Clivern/Racter | src/main/java/com/clivern/racter/senders/BaseSender.java | BaseSender.send | public Boolean send(MessageTemplate template) throws UnirestException
{
String url = this.remote_url + this.configs.get("page_access_token", "");
String body = template.build();
Logger.info("curl -X POST -H \"Content-Type: application/json\" -d '" + body + "' \"" + url + "\"");
HttpR... | java | public Boolean send(MessageTemplate template) throws UnirestException
{
String url = this.remote_url + this.configs.get("page_access_token", "");
String body = template.build();
Logger.info("curl -X POST -H \"Content-Type: application/json\" -d '" + body + "' \"" + url + "\"");
HttpR... | [
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8,797 | fcrepo3/fcrepo | fcrepo-server/src/main/java/org/fcrepo/server/journal/readerwriter/multifile/LockingFollowingJournalReader.java | LockingFollowingJournalReader.openNextFile | @Override
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throws JournalException {
while (open) {
boolean locked = processLockingMechanism();
if (pauseBeforePolling) {
try {
wait(pollingIntervalMillis);
} catch ... | java | @Override
protected synchronized JournalInputFile openNextFile()
throws JournalException {
while (open) {
boolean locked = processLockingMechanism();
if (pauseBeforePolling) {
try {
wait(pollingIntervalMillis);
} catch ... | [
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8,798 | fcrepo3/fcrepo | fcrepo-server/src/main/java/org/fcrepo/server/journal/readerwriter/multifile/LockingFollowingJournalReader.java | LockingFollowingJournalReader.processLockingMechanism | private boolean processLockingMechanism() throws JournalException {
boolean locked;
if (lockRequestedFile.exists()) {
try {
if (!lockAcceptedFile.exists()) {
lockAcceptedFile.createNewFile();
}
} catch (IOException e) {
... | java | private boolean processLockingMechanism() throws JournalException {
boolean locked;
if (lockRequestedFile.exists()) {
try {
if (!lockAcceptedFile.exists()) {
lockAcceptedFile.createNewFile();
}
} catch (IOException e) {
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"."
] | 37df51b9b857fd12c6ab8269820d406c3c4ad774 | https://github.com/fcrepo3/fcrepo/blob/37df51b9b857fd12c6ab8269820d406c3c4ad774/fcrepo-server/src/main/java/org/fcrepo/server/journal/readerwriter/multifile/LockingFollowingJournalReader.java#L139-L169 |
8,799 | fcrepo3/fcrepo | fcrepo-server/src/main/java/org/fcrepo/server/storage/lowlevel/akubra/HashPathIdMapper.java | HashPathIdMapper.getPath | private void getPath(String uri, StringBuilder builder) {
if (pattern.length() == 0) {
return;
}
String hash = getHash(uri);
int hashPos = 0;
for (int i = 0; i < pattern.length(); i++) {
char c = pattern.charAt(i);
if (c == '#') {
... | java | private void getPath(String uri, StringBuilder builder) {
if (pattern.length() == 0) {
return;
}
String hash = getHash(uri);
int hashPos = 0;
for (int i = 0; i < pattern.length(); i++) {
char c = pattern.charAt(i);
if (c == '#') {
... | [
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"h... | gets the path based on the hash of the uri, or "" if the pattern is empty | [
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] | 37df51b9b857fd12c6ab8269820d406c3c4ad774 | https://github.com/fcrepo3/fcrepo/blob/37df51b9b857fd12c6ab8269820d406c3c4ad774/fcrepo-server/src/main/java/org/fcrepo/server/storage/lowlevel/akubra/HashPathIdMapper.java#L130-L145 |
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