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def _psd_from_mt(x_mt, weights): """Compute PSD from tapered spectra. Parameters ---------- x_mt : array Tapered spectra weights : array Weights used to combine the tapered spectra Returns ------- psd : array The computed PSD """ psd = weights * x_mt ...
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from math import log10, ceil def find_scale(pagewidth, pageheight): """Find the power of 10 (10, 100, 1000...) that will reduce the scale below the PDF specification limit of 14400 PDF units (=200 inches)""" major = max(pagewidth, pageheight) oversized = major / 14400.0 return 10 ** ceil(log10(o...
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def strip_prefices(columns, prefices): """Filters leaderboard columns to get the system column names. Args: columns(iterable): Iterable of leaderboard column names. prefices(list): List of prefices to strip. You can choose one of ['channel_', 'parameter_', 'property_'] Returns:...
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def pvc_is_root(pvc): """Return True if a persistent volume claim has a root_key.""" return pvc.spec.selector \ and pvc.spec.selector.match_labels \ and pvc.spec.selector.match_labels.get('root_key', None)
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def sgd(l_rate, parameters, grads): """ Stochastic Gradient Descent. Parameters ---------- :type lr: theano.tensor.scalar :param lr: Initial learning rate :type parameters: theano.shared :params parameters: Model parameters to update :type grads: Theano variable :params grads: Gradients of cost w.r.t t...
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def head(sequence): """ Returns first item from `sequence` or :const:`None` if sequence is empty. >>> head([1]) 1 >>> head([2, 3]) 2 >>> head([(1, 2), (3, 4)]) (1, 2) >>> head() """ try: return next(iter(sequence)) except StopIteratio...
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def get_label_name(node, dialogue_list): """ Takes a node and returns the name for its label """ for dialogue in dialogue_list: if dialogue["Id"] == node["Parent"]: label_name = "{}_{}".format(dialogue["DisplayName"], node["Id"]) return label_name
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def get_original_language(element): """ Returns the original language for a document. """ speaker_language = element.getparent().getparent().getparent().get('LANGUAGE') return speaker_language or '?'
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def http_header(value): """Converts Django HTTP headers to standard format e.g. HTTP_ACCEPT -> Accept HTTP_CACHE_CONTROL -> Cache-Control """ parts = value.split('_') header_parts = [part.title() for part in parts[1:]] formatted = '-'.join(header_parts) return formatted
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def kadane(list_obj=None): """ Find maximum sum of a subarray :param list list_int: list of objs :return: maximum sum of subarray :rtype: int DOCTESTS -------- Test 1 (list of ints): >>> print(kadane([-1, 2, 3, -4, 5, -6])) 6 Test 2 (list of ints): >>> print(kadane([-1...
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def _get_filepath_components(filepath): """ Splits filepath to return (path, filename) """ components = filepath.rsplit("/", 1) if len(components) == 1: return (None, components[0]) return (components[0], components[1])
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def team_id(conn, team): """Returns the id of the team name. Or -1 if no team exists""" c = conn.cursor() c.execute('SELECT id FROM teams WHERE name LIKE ?', (team,)) team_id = c.fetchone() return team_id[0] if team_id else -1
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def check_all_rows(A): """ Check if all rows in 2-dimensional matrix don't have more than one queen """ for row_inx in range(len(A)): # compute sum of row row_inx if sum(A[row_inx]) > 1: return False return True
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def policy_rollout(agent, env, num_traj, horizon): """Rollout an agent to collect trajectories. Args: agent: an agent to rollout. env: an environment to perform rollouts. num_traj: the number of trajectories to collect. horizon: the maximal number of steps for each trajectory. Returns: state...
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def _sign(num): """ Returns the sign of the input Args : num - float Returns : String 'positive' or 'negative' """ if num < 0: return 'positive' else: return 'negative'
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import re def indent_bibtex(string): """ Takes a oneline bibtex string and adds newlines and indents after each item """ result = re.sub(r'}}$', '}\n}\n', string.strip()) result = re.sub(r', (?=[a-zA-Z]+={.*?})', r',\n ', result) return result
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def gasPpmvDryToMoist(x,xh2o): """ Take ppmv dry air to ppmv moist air. """ xd = x/(1+(1e-6*xh2o)) return xd
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def _no_Ns(nt_seq): """ Returns True if a sequence does not have any N's """ if 'N' not in nt_seq: return True else: return False
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from typing import Union from pathlib import Path def file_variations( filename: Union[str, Path], # The original filename to use as a base. extensions: list, ) -> list: # list of Paths """Create a variation of file names. Generate a list of variations on a filename by replacing the extension with ...
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def iso_string_to_sql_date_mysql(x: str) -> str: """ Provides MySQL SQL to convert an ISO-8601-format string (with punctuation) to a ``DATE``, just by taking the date fields (without any timezone conversion). The argument ``x`` is the SQL expression to be converted (such as a column name). """ ...
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import requests def ECG_trace_list(MRI): """ Get a list of patient's ECG images(except the latest one) Target a patient in the database by the MRI, use the 'GET' request for server to get that patient's all ECG image timestamps(except the latest one) and save them to a string. Args: int/...
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def contains(begin, end, node): """Check node is contained between begin and end in a ring.""" if not end: return False if not begin: return False if begin > end: # circle around # [begin ,1024[ or [0 , end] if (node > begin and node < 1024) or (node >= 0 and node <...
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def const(x): """Return a function that takes any arguments and returns the specified value. Parameters ---------- x Value to return. Returns ------- `function` """ return lambda *args, **kwargs: x
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def join(items): """Join items with commas, 'and'""" n = len(items) return '' if n == 0 else items[0] if n == 1 else ' and '.join( items) if n == 2 else ', '.join(items[:-1] + ['and ' + items[-1]])
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def parse_report_for_epoch_metrics(report_dict, metrics=["train_mIoU"]): """ Parse report for given metric information over epoch and add them to list Arguments: report_dict: dictionalry with raw report data metrics: list of metrics to search over epoch Returns: result: the dicti...
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def rotate(password, rotate_type, *params): """Rotate password - rotate left/right X steps - means that the whole string should be rotated; for example, one right rotation would turn abcd into dabc. - rotate based on position of letter X - means that the whole string should be rotat...
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import string def is_punctuation(token): """ Determine whether a token is punctuation. """ return token in string.punctuation + '’‘“”``'
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def create_sorted_stats_dfs(df): """ Takes a dataframe with phrase as index, percentage docs of all years, 3 Mann-Kendall statistic-related columns, and 3 Theil-Sen slope-related columns, produces 5 dataframes: (i) phrases with increasing trend (in descending order of Mann-Kendall Z), (ii) phrases with decr...
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import random def change_coords_a_bit(coords, max_delta=0.05): """ Used for fluctuating the given coordinates by max_delta. The goal is to avoid overlapping pins on the map. """ new_x = coords[0] + random.random()*max_delta*random.choice([-1, 1]) new_y = coords[1] + random.random() * max_delt...
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def lines(a, b): """Return lines in both a and b""" lines = [] # Split string a into lines: \n # For each lines: for line in a.split("\n"): # Split string b into lines: \n # Check if line from a appears in b if line in b.split("\n"): # Check if the line is empty ...
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def flat_correct(ccd, flat, min_value=None, norm_value=None): """Correct the image for flat fielding. The flat field image is normalized by its mean or a user-supplied value before flat correcting. Parameters ---------- ccd : `~astropy.nddata.CCDData` Data to be transformed. flat ...
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def lowest_index(arr, target): """ Finds the lowest index of target in arr. If target in arr, returns lowest index i such that arr[i] == target, else returns index i where it should be inserted while keeping arr sorted. Args: arr array to search target in target value Returns: ...
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def helper_float(val): """ Helper function for use with `dict_reader_as_geojson`. Returns `None` if the input value is an empty string or `None`, otherwise the input value is cast to a float and returned. """ if val is None or val == '': return None else: return float(val)
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def build_path(pattern, keys): """Replace placeholders in `pattern` to build path to be scraped. `pattern` will be a string like "measure/%(measure)s/ccg/%(entity_code)s/". """ substitutions = { "practice_code": "L83100", "ccg_code": "15N", "stp_code": "E54000037", "reg...
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def _get_basic_re_expr(re_expr: str) -> str: """ Converts a regular expression to a basic regular expression. Parameters ---------- re_expr : str Regular expression. Returns ------- str Basic regular expression. """ return re_expr
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def from_table_to_obj_list(table, obj_type, separator="|"): """ Map a given tabular output into a python object. The python object you want to map the table into needs to define a MAPPINGS dictionary which declare how to map each row element into the object itself. Each entry of the MAPPINGS dictio...
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def drop_dark_data(df): """Return dataframe in which the index does not contain the string 'dark' """ s = df.index.str.contains("dark") return df[~s].copy()
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def _sanitize_log_msg(record): """ Sanitize log message to make sure we can print out properly formatted JSON string :param record: log object :return: sanitized log object """ return record.getMessage().replace('\n', '_').replace('\r', '_').replace('\t', '_')
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from typing import Dict def rename_attributes( obj: Dict, old_to_new_attributes: Dict[str, str], in_place: bool = False ) -> Dict: """Rename a set of attributes in the given dict object. Second parameter is a dict that maps old to new attribute names. Default is to return a copy, but can also pass in_plac...
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import time def timestr_unix(time_str): """ transfer formatted timestamp to unix time. Args: time_str (str): formated time string. Returns: int: unix time. """ time_format_with_hill = '%Y-%m-%dT%H:%M:%S.%f%z' time_str = time_str[:26] + time_str[-6:] time_format = tim...
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import csv def get_X_y(data_file): """Read the log file and turn it into X/y pairs. Add an offset to left images, remove from right images.""" X, y = [], [] steering_offset = 0.4 with open(data_file) as fin: for _, left_img, right_img, steering_angle, _, _, speed in csv.reader(fin): ...
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def order_to_degree(order): """Compute the degree given the order of a B-spline.""" return int(order) - 1
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def get_character_node(graph, character, only_one=False): """Return nodes for the given character :param graph: The graph :type graph: nx.Graph :param character: The character :type character: str :param only_one: boolean in order to return one node or all found nodes, defaults to False ...
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import re def extract_libraries(files): """Extracts a list of imports that were used in the files Parameters ---------- files : []string Full paths to files that need to be analysed Returns ------- dict imports that were used in the provided files, mapped against the lang...
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def queue_requeue(queue, index=-1): """Returns the element at index after moving it to the beginning of the queue. >>> x = [1, 2, 3, 4] >>> queue_requeue(x) 4 >>> x [4, 1, 2, 3] """ x = queue.pop(index) queue.insert(0, x) return x
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def getCol(table, index): """ Gets a col by an index Ignores "NA" """ col = [] for row in table: if (row[index] == 'NA'): continue col.append(row[index]) return col
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import struct def int_from_bytes(val): """Converts val to an unsinged int assuming a BE byte order""" try: return int.from_bytes(val, 'big') except AttributeError: # Older Python, so pad it and unpack return struct.unpack('>L', b'\x00'*(4-len(val))+val)[0]
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import io import re import math def mem_per_core(units='kB'): """returns memory per core in kb (default) or another desired unit""" with io.open('/proc/meminfo') as f: lines = [x for x in f.readlines() \ if re.search('MemTotal', x) is not None] mem = float(lines[0].split()[1])...
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def django_url_preprocessor(url, root_url): """ Convert url from the simplified string version for app developers to Django regular expression. e.g.: '/example/resource/{variable_name}/' r'^/example/resource/?P<variable_name>[1-9A-Za-z\-]+/$' """ # Default Django expression that wi...
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import types import functools def compose(*funcs): """ Functional composition of a non-empty list [f, g, h] will be f(g(h(x))) :Example: >>> f = lambda x: x * x >>> g = lambda x: x + 1 >>> h = lambda x: x * 2 >>> funcs = [f, g, h] >>> fgh = compose(*funcs) >>> fgh(3) # 49 ...
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def get_table3_coeff(A_A): """その他の一次エネルギー消費量の算出に用いる表3の係数を取得 Args: A_A(float): 床面積の合計 (m2) Returns: tuple: 係数 a_SV, b_SV """ # その他の一次エネルギー消費量の算出に用いる係数 table_3 = [ (33, 38, 33), (129, -21, 579) ] if A_A < 30: index = 0 elif A_A < 120: ind...
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def is_quoted(value): """ Return a single or double quote, if a string is wrapped in extra quotes. Otherwise return an empty string. """ ret = "" if ( isinstance(value, str) and value[0] == value[-1] and value.startswith(("'", '"')) ): ret = value[0] retur...
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def normalize_events_list(old_list): """Internally the `event_type` key is prefixed with underscore but the API returns an object without that prefix""" new_list = [] for _event in old_list: new_event = dict(_event) new_event['event_type'] = new_event.pop('_event_type') new_list....
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from pathlib import Path def _make_path(base: Path, segment: str) -> Path: """ Returns the segment relative to the given base, if it's a relative path Absolute paths are returned as is. """ original_path = Path(segment) if original_path.is_absolute(): return original_path return b...
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def split_str_zmat(zmat_str: str) -> tuple: """ Split a string zmat into its coordinates and variables sections. Args: zmat_str (str): The zmat. Returns: tuple[str: The coords section, str: The variables section if it exists, else None, ] """ coords, ...
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def _normalize_last_4(account_number: str): """Convert authorize.net account number to Saleor "last_4" format. Example: XXXX1111 > 1111 """ return account_number.strip("X")
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import random def roulette_selection(population, minimize, num_selected_ind): """ This function returns a list with the ids of the individuals selected by the roulette wheel selection. Note that the normalized fitness of the population must be calculated before calling this function (call the method Gavl._Populat...
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def RR_calc(classes, TOP): """ Calculate Global performance index (RR). :param classes: confusion matrix classes :type classes: list :param TOP: number of positives in predict vector per class :type TOP: dict :return: RR as float """ try: class_number = len(classes) ...
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def find_averages_of_subarrays_pythonic(arr: list[int], K: int) -> list[float]: """ Args: arr: input array K: subarray (window) size Returns: average of all K-length subarrays Examples: >>> find_averages_of_subarrays_pythonic([1, 3, 2, 6, -1, 4, 1, 8, 2],5) [2....
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def convert_null_geometry_to_none(frame): """Utility method. Convert any geometry in the geoDataFrame which is "null" (`None` or empty) to `None`. The returned geoDateFrame is suitable for saving. """ def null_to_none(x): if x is None or x.is_empty: return None return x...
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def socket_mem_from_vars(ansible_vars): """ Return list of DPDK socket memory values defined in Ansible variables """ numa_nodes = ansible_vars["numa_nodes"] socket_mem = [] for node in sorted(numa_nodes.keys()): socket_mem.append(numa_nodes[node]["dpdk_socket_mem"]) return socket_mem
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def nested_lookup(n, idexs): """Function to fetch a nested sublist given its nested indices. Parameters ---------- n: list, the main list in which to look for the sublist idexs: list, the indices of the sublist Returns ------- list: sublist with given indices """...
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def is_model_on_gpu(model): """ Function to check whether given model is created on GPU or CPU Assumption : model is on single device :return: True if the model is on GPU, False if on CPU """ return next(model.parameters()).is_cuda
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def getWindowGeometry( topLevelWindow ): """ Returns a tuple of ( width, height, distanceFromScreenLeft, distanceFromScreenTop ) """ try: dimensions, topDistance, leftDistance = topLevelWindow.geometry().split( '+' ) width, height = dimensions.split( 'x' ) geometry = ( int(width), int(height), int(topDistance...
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def _window_has_intervening_extrema(window, contour, mode): """ Steps 8/9. If there exists a sequence of equal maxima or minima, check if the sequence contains an intervening opposite extrema, i.e. if a sequence of two equal maxima contains a minima between them. >>> maxima_group = [ ... (2, [2, {1}]), ... (4...
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def skip_testing_during_training(task): """Filter to determine if we should be running test-time evaluation. In cloth and bag tasks, we need `--disp` (at least with PyBullet 2.8.4), and that causes problems if instantiating multiple `Environment`s, as in standard testing. Furthermore, all 'Deformable Ravens' t...
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def format_semicolon_list(semi_list): """Formats a string representing a semi colon separated list into MCF property values list format. This is used to format 'PMIDs' in relationships.tsv. Args: semi_list: a string representing a semi colon separated list Returns: A string that i...
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import string def get_sentiment(text, word_map): """ Identifies the overall sentiment of the text by taking the average of each word. Note: Words not found in the word_map dict are give zero value. """ # remove all punctuation text = text.translate(str.maketrans("", "", string.punctuatio...
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from typing import List def is_valid_sample(nn_intervals: List[float], outlier_count: int, removing_rule: float = 0.04) -> bool: """ Test if the sample meet the condition to be used for analysis Parameters ---------- nn_intervals : list list of Normal to Normal Interval outlier_count :...
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import yaml def update_config(config, updates): """Modifies the YAML configurations, given a list of YAML updates. """ if isinstance(updates, str): updates = [updates] for update in updates: edits = yaml.safe_load(update) for k, v in edits.items(): node = config ...
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import re def IsHtml(data): """Return True if data is HTML, False otherwise. Args: data: str Data to check. Returns: bool True if data is HTML, False otherwise. """ # Remove banners and XML header. Convert to lower case for easy search. data = ''.join(data.split('\n')).lower() pattern = re.com...
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def parse_ped(pedfile): """Parse the PED file and store it in a dictionary of {lineid: [PED_data]}""" ped_data = {} with open(pedfile, 'r') as f: for line in f: tmp = line.strip().split() lid = tmp[1] # add the line to the ped_data ped_data[lid] = ...
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def filter_values(item): """ Returns last element of the tuple or ``item`` itself. :param object item: It can be tuple, list or just an object. >>> filter_values(1) ... 1 >>> filter_values((1, 2)) ... 2 """ if isinstance(item, tuple): return item[-1] return item
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def merge_p(bi,p,bigrams): """ Calculates the merge probability by combining the probs of the bigram of words and the prob of merge. Arguments bi : bigram p : p(MG->mg) from grammar (should be 1) Returns combined probability of merge op and bigram """ (w1,w2)=bi return bi...
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import json def write_json(filename, data): """Saves data to a json file.""" with open(filename, 'w', encoding='utf-8') as file: json.dump(data, file, sort_keys=False, indent=4, ensure_ascii=False) return True
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import re def get_dihedrals(qm_scan_file): """ Returns dihedrals from the torsiondrive scan file. Parameters ---------- qm_scan_file : str Output scan file containing torsiondrive scans. Returns ------- dihedrals : list List of all the dihedral values from the qm sca...
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def target_function( foo: str, bar: int, /, baz: bool, spam: str = "foobar", *, egg: bytes = b"" ) -> dict[str, str]: """ This function is a test fixture. **Args** * foo (`str`): Lorem ipsum. * bar (`int`): *italic* * baz (`bool`): **emphasize** * spam (`str`): Multiline description ...
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def get_frame_index(d): """Get frame index from the whole dictionary E.g., '{'index': 'data/Deploy/KLAC/KLAC0570/KLAC0570_12.jpg', 'prediction': ..., 'label': ...}' ==> (int) 12 """ return int(d['index'].split('_')[-1][:-4])
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def getDictFromTuple(values: tuple, keys: list, includeNone: bool = True): """returns a dict based on the tuple values and assigns the values to the keys provided\n for instance, values=(1, "bill", 5} and keys=["id", "name", "age"] returns {"id": 1, "name": "bill", "age": 5} """ _obj = {} for _i in ...
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def take_transcript_id_without_version(full_id): """Returns transcript id without version and everything which is after version separating comma. Example: Input: ESNT_0001.4 Output: ESNT_0001 Input: ESNT_0002.2.some_annotation Output: ESNT_0002 """ return full_id.split...
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def GetIdentifier(default): """Return the identifier for the keychain.""" return default
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def doble_queso(pizza): """ (list of str) -> list of str Agrega queso al principio y final de la pizza si no tiene >>> doble_queso(['queso', "jamon"]) ['queso', 'jamon', 'queso'] >>> doble_queso(["jamon", 'queso']) ['queso', 'jamon', 'queso'] >>> doble_queso(["jamon"]) ['queso', 'j...
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import json def parse_log(log_file): """Parse a newline-separated logfile into result objects.""" with open(log_file, 'r') as fp: results = [json.loads(line.strip()) for line in fp] return results
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def num_disambiguated_iupac_strings(seq, ambiguous_letters, disambiguation): """ seq is Bio.Seq.Seq or str ambiguous_letters is string containing ambiguous IUPAC codes disambiguation is dict with key from ambiguous_letters and values the strings containing the unambiguous versions (e.g., Bio.D...
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def num2alphabet(number): """This function converts a number into its corresponding alphabetic letter. Meaning 1 gives a A while 2 gives a B. Since i use it to acces the excel collumns I convert the numbers to uppercase chars. When a number is higher than 26 the remainder gets appended to the A such that 27...
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def get_vm_name(name): """ Map node name to VM name by stripping DNS suffix """ return name.split('.', 1)[0]
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def binary_search(lo, hi, f): """Binary searches in [lo , hi) to find n such that f(n) == f(lo) but f(n + 1) != f(lo). It is implicitly assumed and will not be checked that f(hi) != f(lo). """ reference = f(lo) while lo + 1 < hi: mid = (lo + hi) // 2 if f(mid) == reference:...
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def sparse_onenorm(A): """ Computes the 1-norm of the scipy sparse matrix `A`. Parameters ---------- A : scipy sparse matrix The matrix or vector to take the norm of. Returns ------- float """ return max(abs(A).sum(axis=0).flat)
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def if_not_read_only(f): """Raise TypeError if decortd function is called while read only is True.""" def wrapper(*args): if args[0]._read_only: raise TypeError("This dictionary is read only!") return f(*args) return wrapper
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def _popup_footer(view, details): """ Generate a footer for the package popup that indicates how the package is installed. """ return """ {shipped} <span class="status">Ships with Sublime</span> &nbsp; &nbsp; {installed} <span class="status">In Installed Packages Folder</span> &nbsp;...
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import re def extract_jobs_flags(mflags): """Extracts make job flags from a list of other make flags, i.e. -j8 -l8 :param mflags: string of space separated make arguments :type mflags: str :returns: list of make jobs flags :rtype: list """ if not mflags: return [] # Each line...
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def sort_set_by_list(s, l, keep_duplicates=True): """ Convert the set `s` into a list ordered by a list `l`. Elements in `s` which are not in `l` are omitted. If ``keep_duplicates==True``, keep duplicate occurrences in `l` in the result; otherwise, only keep the first occurrence. """ if kee...
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from pathlib import Path def get_resource_path(resource_name): """Return path to module resource dir. :return: Path to module resource dir. :rtype: Path() """ bundle_dir = Path(__file__).parent return Path.cwd() / bundle_dir / 'resources'/ resource_name
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async def _reset_notif_task_store(**kwargs): """Reset notification_task_store to default values (triggers notifications). """ client = kwargs["client"] client.ds.set_notification_task_vars(False, {}) return "Reset notification_task_store"
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def fetch_samples(prj, selector_attribute=None, selector_include=None, selector_exclude=None): """ Collect samples of particular protocol(s). Protocols can't be both positively selected for and negatively selected against. That is, it makes no sense and is not allowed to specify b...
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def set_size(width, fraction=1): """ Set aesthetic figure dimensions to avoid scaling in latex. :param float width: Width in pts :param float fraction:Fraction of the width which you wish the figure to occupy :return fig_dim: Dimensions of figure in inches :rtype: Tuple[float, float] """ f...
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import re def fix_links(chunk, tag2file): """Find and fix the the destinations of hyperlinks using HTML or markdown syntax Fix any link in a string text so that they can target a different html document. First use regex on a HTML text to find any HTML or markdown hyperlinks (e.g. <a href="#sec1"> or ...
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def convert_subscripts(old_sub, symbol_map): """Convert user custom subscripts list to subscript string according to `symbol_map`. Examples -------- >>> oe.parser.convert_subscripts(['abc', 'def'], {'abc':'a', 'def':'b'}) 'ab' >>> oe.parser.convert_subscripts([Ellipsis, object], {object:'a'}) ...
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import torch def load_checkpoint(model, optimizer, scheduler, device, checkpoint_file: str): """Loads a model checkpoint. Params: - model (nn.Module): initialised model - optimizer (nn.optim): initialised optimizer - scheduler: initialised scheduler - device (torch.device): device model is on ...
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def async_setup(hass, config): """Register the built-in map panel.""" yield from hass.components.frontend.async_register_built_in_panel( 'map', 'Map', 'mdi:account-location') return True
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