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def interpolate_zeros(x, f): """ For two float arrays of data, representing a 2d plot (x, f) in order - determine all the locations of x at which f crosses zero (using linear interpolation). Return as a list. """ assert len(x) == len(f) xcross = [] for i in range(len(f) - 1): x0...
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from torch import randperm from torch._utils import _accumulate def split_datasource(datasource, lengths): """ Split a datasource into non-overlapping new datasources of given lengths """ if sum(lengths) != len(datasource): raise ValueError("Sum of input lengths does not equal the length of th...
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def is_subclass(obj, superclass): """Safely check if obj is a subclass of superclass.""" try: return issubclass(obj, superclass) except Exception: return False
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def get_games(event_sets: list) -> list: """ gets games from a list of sets """ games = [] for event_set in event_sets: set_id = event_set['id'] for game_number, game in enumerate(event_set['games']): if game['selections'] is not None: game['setId'] = set_...
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from pathlib import Path def pad_filename(filename): """ pyAudioAnalysis adds stuff like "131.700-132.850" and "14.200-26.500" to the output filenames this doesn't sort properly because the numbers like 131 and 14 are not padded with zeros. """ time_range = Path(filename).stem.replace('2000-essent...
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def argsort(seq): """ Same as NumPy's :func:`numpy.argsort` but for Python sequences. :param seq: a sequence :return: indices into `seq` that sort `seq` """ return sorted(range(len(seq)), key=seq.__getitem__)
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def make_matrix(num_rows, num_cols, entry_fn): """构造一个第 [i, j] 个元素是 entry_fn(i, j) 的 num_rows * num_cols 矩阵""" return [ [ entry_fn(i, j) # 根据 i 创建一个列表 for j in range(num_cols) ] # [entry_fn(i, 0), ... ] for i in range(num_rows) ]
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import json async def _stream_next_event(stream): """Read the stream for next event while ignoring ping.""" while True: last_new_line = False data = b"" while True: dat = await stream.read(1) if dat == b"\n" and last_new_line: break ...
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def divide(a, b): """ Divide two numbers Parameters: a (float): counter b (float): denominator Returns: float: division of a and b """ if b == 0: raise ValueError("Cannot divide by zero!") return a / b
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def expand_addrmask(addrmask): """Expands a masked memory address to a list of all the applicable memory addresses it could refer to. That is, a string like "00X1010X" could stand for the binary numbers 00010100, 00010101, 00110100, or 00110101, which correspond to decimal values 20, 21, 52, or 53, resp...
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def compute_fibonnaci(n: int): """ Compute the nth term in the fibonacci sequence. """ if n == 0: return 0 if n == 1: return 1 return compute_fibonnaci(n-2) + compute_fibonnaci(n-1)
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from typing import OrderedDict import math def clean_anime_details(information_dict): """ Cleans raw extracted data Parameters ---------- information_dict: dict The dictionary holding extracted data """ # Creating final dictionary from dictionary passed since hard to account for ...
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def _get_snapshot_id_and_previous_session_id(session_spec, data_store): """Retrieve the snapshot ID and previous session ID in a tuple. Args: session_spec: session_pb2.SessionSpec proto containing info about current session to draw the previous session and snapshot from. data_store: data_store.DataSt...
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def _compare_across(collections, key): """Return whether all the collections return equal values when called with `key`.""" if len(collections) < 2: return True c0 = key(collections[0]) return all(c0 == key(c) for c in collections[1:])
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def multivariate_regression_predict(X, w_opt): """Predict with multivariate regression. Arguments: X {DataFrame} -- Independent variables. w_opt {ndarray} -- Parameter values. Returns: ndarray -- Predicted values. """ X = X.values y_pred = X.dot(w_opt) return y_pre...
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def compute_direct_sort_map(lang): """ Return a map from each sort s to a list of the objects that have s as their direct sort (i.e. ignoring parent sorts). """ res = {s: [] for s in lang.sorts if not s.builtin} _ = [res[o.sort].append(o) for o in lang.constants()] return res
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def is_new_subscription(doc): """ Returns `True` if `Subscription` has never generated an invoice """ return len(doc.invoices) == 0
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from typing import List import random def training_room_names(random_order: bool = True) -> List: """ return training room names in (random) order """ names = ['Trainings'] if random_order: random.shuffle(names) return names
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def check_month(month_number, month_list): """ Check if a month (as integer) is in a list of selected months (as strings). Args: month_number: The number of the month. month_list: A list of months as defined by the configuration. Returns: Bool. """ month_map = { ...
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def is_valid_variable_name(varname): """ Tests if a variable name is valid. Variable names must: - begin with an alphabetic character Variable names can: - contain arbitrarily many single quotes as their final characters x or x' or x''' but not x''yz - contain any se...
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def _get_indices_dataset_notexist(input_time_arrays): """ Build a list of [start,end] indices that match the input_time_arrays, starting at zero. Parameters ---------- input_time_arrays list of 1d xarray dataarrays or numpy arrays for the input time values Returns ------- list ...
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from typing import Tuple from pathlib import Path def endswith(path, suffixes: Tuple[str, ...]) -> bool: """ Returns whether the path ends with one of the given suffixes. If `path` is not actually a path, returns True. This is useful for allowing interpreters to bypass inappropriate paths, but alw...
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def group_by_with_aggregation( df, by, agg_column_names, aggregators = ('mean', 'std') ): """Group by with aggregation. Args: df: Dataframe to perform group by on. by: Which column to group by. agg_column_names: Which columns to aggregate over. Have to be columns containing numeri...
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from typing import Dict from typing import Any import pprint def describe_item(data: Dict[str, Any], name: str) -> str: """ Function that takes in a data set (e.g. CREATURES, EQUIPMENT, etc.) and the name of an item in that data set and returns detailed information about that item in the form of a str...
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def float_to_bin(num, length): """ Convert float number to binary systems :param num: Number to change :type num: float :param length: The maximum length of the number in binary system :type length: int :return: Returns a number converted to the binary system :rtype: string """ ...
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def merge(left, right): """ 再帰処理中で呼び出す、分割された配列を結合する関数 再帰処理中で呼び出すため、渡される配列はソート済み :param left: 左側の配列 :param right: 右側の配列 :return: 結合された配列 """ merged = [] l_i, r_i = 0, 0 # ソート済みの配列をマージするため、それぞれ左から見ていくだけで良い while l_i < len(left) and r_i < len(right): # ここで=をつけることで安定性を保っ...
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def extract_crops(image, size, stride=1): """Extract crops of size size from image using stride. Careful! This function only works for a batch_size = 1. Args: image: torch tensor, dtype = torch.float32. expected dimensions: C X W X H, e.g. torch.Siz...
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def tmask_blocks(tmask, min_block=0, sample_time=1): """ Return a list containing the indices of each valid block of a temporal mask. Parameters ---------- tmask The temporal mask, in which 1 denotes valid observations and 0 denotes invalid or missing observations. min_block...
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def get_iou(bb1, bb2): """ Gets the Intersection Over Area, aka how much they cross over Assumption 1: Each box is a dictionary with the following {"x1":top left top corner x coord,"y1": top left top corner y coord,"x2": bottom right corner x coord,"y2":bottomr right corner y coord} ...
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from typing import List def comment_lines(lines: List[str]) -> List[str]: """ Adds a multi line comment to a List of source lines. :param lines: The source lines to be commented. :returns: The commented List of of source lines. """ lines[0] = f'"""{lines[0]}' if not lines[-1].endswith("\...
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from typing import List from typing import Counter def _categorical_value_intersection( all_chars: List ) -> bool: """ A method that finds if there are items that appear more than once in a list :param all_chars: the list we want to check :return: `True` if there is an intersection, `False` o...
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def project_list(d, ks): """Return a list of the values of `d` at `ks`.""" return [d[k] for k in ks]
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import hashlib def getETag(data): """Gets the ETag for the specified data. Args: data: The data for which the ETag should be generated. """ md5 = hashlib.md5() md5.update(data) return md5.hexdigest()[-16:]
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def filter_terms(p, degree_limit): """ This function gets the n-variable polynomial p and the number degree_limit and returns the polynomial which consists of terms of degree at most degree_limit :param p: n-variable polynomial :param degree_limit: boundary for degree :return: n-variable polynom...
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import torch def sig(x, a): """ Applies a sigmoid function on data in [0-1] range. Then rescales the result so 0.5 will be mapped to itself. """ # Apply Sigmoid y = 1. / (1 + torch.exp(-a * x)) - 0.5 # Re-scale y05 = 1. / (1 + torch.exp(-torch.tensor(a * 0.5, dtype=torch.float32))) -...
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def rubygems_homepage_url(name, version=None): """ Return a Rubygems.org homepage URL given a ``name`` and optional ``version``, or None if ``name`` is empty. For example: >>> url = rubygems_homepage_url(name='mocha', version='1.7.0') >>> assert url == 'https://rubygems.org/gems/mocha/versions/...
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import random def generate_password(length): """Generate a password of a desired length with numbers, symbols, upper and lowercase letters""" if length < 4: raise ValueError('length must be 4 or greater') lower_chars = ['a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j', 'k', 'l', ...
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def space_separated(value): """ Return a list of values from a `value` string using one or more whitespace as list items delimiter. Empty values are NOT returned. """ if not value: return [] return list(value.split())
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def is_private(key): """ Returns whether or not an attribute is private. A private attribute looks like: __private_attribute__. :param key: The attribute key :return: bool """ return key.startswith("__") and key.endswith("__")
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import math def lin_srgb(rgb): """ Convert an array of sRGB values in the range 0.0 - 1.0 to linear light (un-corrected) form. https://en.wikipedia.org/wiki/SRGB """ result = [] for i in rgb: # Mirror linear nature of algorithm on the negative axis abs_i = abs(i) if a...
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from datetime import datetime import requests import zipfile import io def get_shares_file(date): """ Download the file with the number of shares and returns bytes Args: date: Timestamp Returns: bytes """ file_date = datetime.strftime(date, "%y%m%d") file_url = f'http://www.b3.com....
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from typing import Any from typing import Iterable def is_iterable(obj: Any) -> bool: """check whether `x` is an iterable object but not string""" return isinstance(obj, Iterable) and not isinstance(obj, str)
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def clan_url(clan_tag): """Return clan URL on CR-API.""" return 'http://cr-api.com/clan/{}'.format(clan_tag)
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def broken_bond_keys(tra): """ keys for bonds that are broken in the transformation """ _, _, brk_bnd_keys = tra return brk_bnd_keys
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def xyxy2xywh(bbox): """Convert ``xyxy`` style bounding boxes to ``xywh`` style for COCO evaluation. Args: bbox (numpy.ndarray): The bounding boxes, shape (4, ), in ``xyxy`` order. Returns: list[float]: The converted bounding boxes, in ``xywh`` order. """ _bbox = bbo...
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from typing import Optional from datetime import datetime def get_dttm(date_time: Optional[datetime] = None) -> str: """ Get DTTM from datetime or actual time. Args: date_time: The input datetime or None for use now() Returns: dttm - str """ return (date_time or datetime.now(...
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def convert_values_to_none(event, field_or_field_list, field_values=None): """ Changes a field to None. If a field value is specified then only that value will be changed to None :param event: A dictionary :param field_or_field_list: A single field or list of fields to convert to None :param field_val...
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def power_law(deg_sep, ALPHA=1.0): """ Applies a power law model. WEIGHT = DEG_SEP^(-ALPHA) ALPHA: Parameter to control power law decay rate. """ return (deg_sep + 1) ** (- ALPHA)
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def swagger_escape(s): # pragma: no cover """ / and ~ are special characters in JSON Pointers, and need to be escaped when used literally (for example, in path names). https://swagger.io/docs/specification/using-ref/#escape """ return s.replace('~', '~0').replace('/', '~1')
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def open_r(filename): """Open a file for reading with encoding utf-8 in text mode.""" return open(filename, 'r', encoding='utf-8')
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import signal def convert_signal_name_to_signal(signal_name): """ >>> convert_signal_name_to_signal('-SIGUSR2') <Signals.SIGUSR2: 12> >>> convert_signal_name_to_signal('SIGUSR2') <Signals.SIGUSR2: 12> >>> convert_signal_name_to_signal('USR2') <Signals.SIGUSR2: 12> >>> convert_signal_na...
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def add_new_user(network, user, games): """ Creates a new user profile and adds that user to the network, along with any game preferences specified in games. Assumes that the user has no connections to begin with. Arguments: network: the gamer network data structure. user: a string containin...
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def cookie_repr(c): """ Return a pretty string-representation of a cookie. """ return f"[key]host=[/key][cyan3]{c['host_key']}[/cyan3] " +\ f"[key]name=[/key][cyan3]{c['name']}[/cyan3] " +\ f"[key]path=[/key][cyan3]{c['path']}[/cyan3]"
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def _transform_kwargs(kwargs): """ Replace underscores in the given dictionary's keys with dashes. Used to convert keyword argument names (which cannot contain dashes) to HTML attribute names, e.g. data-*. """ return {key.replace('_', '-'): kwargs[key] for key in kwargs.keys()}
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from typing import Union def get_list_value(lst: Union[list, tuple], inds): """get value form index. Args: lst (Union[list, tuple]): target list. inds (Any): value from index. Returns: list: result """ return [lst[i] for i in inds]
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from typing import Reversible from typing import Any def last(it: Reversible[Any]) -> Any: """ Get end of iterable object Args: it: Reversible(Iterable)) object Examples: >>> fpsm.last([1, 2, 3]) 3 >>> fpsm.last('hello world') 'd' """ return next(iter(...
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def not_exonic(variant_class): """Check if SNV is exonic. Args: variant_class: the type of mutation Returns: True for not exonic, False otherwise. """ variant_classes = ["5'Flank", 'Intron', 'RNA', "3'Flank", "3'UTR", "5'UTR", 'IGR'] if variant_class in variant_classes: ...
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def strToFloatOrNone(str): """Returns float representation of str argument or None if empty string. :param str: String to ne converted into float number :return: Float representation of str or None. >>> print strToFloatOrNone("36") 36.0 >>> print strToFloatOrNone("") None """ if...
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def _page_obj(json_object): """takes json input and returns a page object Args: json_object (dict): json data from api Returns: dict: json object for the 'pages' of an article """ query_object = json_object['query'] return(query_object['pages'])
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from typing import Dict import binascii import base64 import json def _decode(encoded: bytes) -> Dict: """ Decode an dictionary (document) encoded as a base64-encoded string. :param encoded: the base64-encoded string :return: the dictionary (document) object """ dec_ascii: bytes = encoded ...
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def in_reduce(reduce_logic_func, sequence, inclusion_list) -> bool: """Using `reduce_logic_func` check if each element of `sequence` is in `inclusion_list`""" return reduce_logic_func(elmn in inclusion_list for elmn in sequence)
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def eval_basic_op(l: str, op: str, r: str) -> str: """ Evaluate a basic arithmetic operation :param l: Left operand :param op: Operator :param r: Right operand :return: Result or a string representing the operation if it cannot be calculated """ if l.isdecimal() and r.isdecimal(): ...
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def getData(d): """Returns the data object used""" return d
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def mostly_tracked(df, track_ratios): """Number of objects tracked for at least 80 percent of lifespan.""" return track_ratios[track_ratios >= 0.8].count()
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def determiner_to_num(tag): """Converts a/an to 1.""" if tag[1] != "DET": return False, None if tag[0].lower() in ("a","an"): return True, ("1","NUM") return False, None
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from dateutil import tz import dateutil.parser def UTC_time(ISO_datestring): """Converts local ISO datastring to UTC date string""" from_zone = tz.gettz('Pacific/Auckland') to_zone = tz.gettz('UTC') ISO_date = dateutil.parser.parse(ISO_datestring) UTC_date = ISO_date.astimezone(to_zone) UTC_...
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from typing import Union from pathlib import Path from typing import List def get_list_of_directories( directory_path: Union[str, Path], descending=False ) -> List[Path]: """Gets a list of directories in a directory. Parameters ---------- directory_path : Union[str, Path] The path to the ...
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def get_xarray_group(dataset, group): """Get pseudo group from xarray.Dataset Args: dataset: A xarray.Dataset object with pseudo groups. group: The name of the group (can also be a subgroup). Returns: A xarray.Dataset with the pseudo group. """ if not group.endswith("/"): ...
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def to_str(value, encoding): """Decode a :obj:`bytes` object into a str with UTF-8 encoding. :param bytes value: The value to decode :param str encoding: The encoding type to use :rtype: str """ return value.decode(encoding)
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def gray_to_binary(n): """Convert Gray codeword to binary and return it""" mask=n=int(n,2) # Convert to int while mask != 0: mask >>= 1 n ^= mask return bin(n)[2:] # bin(n) returns n's binary representation with a '0b' prefixed # the slice operation is to remove the prefix
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def format_duration_ms(ms): """Format milliseconds (int) to a human-readable string.""" def _format(d): d = str(d) if len(d) == 1: d = '0' + d return d s = int(ms / 1000) if s < 60: return '00:{}'.format(_format(s)) m, s = divmod(s, 60) return '{}:{}...
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def _convert_timestamp(time): """Convert datetime.datetime to string in datetime64[s] format :arg time: datetime.datetime object :return datetime64: str in datetime64[s] format """ year, month, day, hour, minute, second = str(time.year), str(time.month), str(time.day), str(time.hour), str(time.minut...
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import re def has_symbol_usage(symbol: str, text: str) -> bool: """ Determine whether a symbol occurs in a text. """ # star matches any non-whitespace character symbol = symbol.replace('*', '\S*?') # match any use of symbol as a stand-alone element pattern = r'\b{0}\b'.format(symbol) # we're...
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def get_start_urls(base_url, webserver_map_entry): """ Extract the start URLs from the current webserver map results if available """ start_urls = [] for _, pages_node in webserver_map_entry.items(): for path in pages_node: # base_url[:-1] to strip trailing slash, b/c path has a...
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def get_title(section_div): """Return the fathead entry title. Parameters ---------- section_div : bs4.BeautifulSoup The BeautifulSoup object corresponding to the div with the "class" attribute equal to "section" in the html doc file. Returns ------- title : Str The...
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def digraph_edge_hamming_dist(g1, g2): """Returns number of directed edge mismatches between digraphs g1 and g2.""" dist = 0 for e1 in g1.edges: if e1 not in g2.edges: dist += 1 return dist
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def count_by(x, n): """ Return a sequence of numbers counting by `x` `n` times. """ return range(x, x * n + 1, x)
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import math def calc_viz_lim(P): """ Eq. 4.4 Calculates the visibility limit of the satellite, which is dependent on the satellite's altitude. Parameters ------------ P : float The projection parameter of the satellite Returns ------------ ups : float The visi...
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def get_column_names(outcomes, races, genders, pctiles): """ Generate column names for outcomes and factors selected""" col_names = [] for outcome in outcomes: for race in races: for gender in genders: for pctile in pctiles: col_names.append(outcome + ...
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def get_and_check_wine_arch_valid(wine_arch: str = '') -> str: """ check for valid winearch - if wine_arch is empty, default to win32 valid choices: win32, win64 >>> import unittest >>> assert get_and_check_wine_arch_valid() == 'win32' >>> assert get_and_check_wine_arch_valid('win32') == 'win32...
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import smtplib def connect(smtp_server, smtp_port, email, password): """ Connect to the SMTP server to send emails. :param smtp_server: Hostname or IP Address of the SMTP server :param smtp_port: Port number of the SMTP server. :param email: Valid email address for authentication. :param pass...
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import csv def sj_out_to_jxs(sj_out): """Accepts STAR-generated SJ.out.tab file & returns list of its junctions. Input: sj_out (str) string pointing to STAR output __SJ.out file containing junction calls from a STAR alignment. Returns a list of the file's unique junctions in 0-based closed coord...
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import re def remove_non_numeric (value): """ Remove non-numeric characters from value. :param value: The value to be modified. :return Numeric value. """ return re.sub("[^0-9]", "", value)
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def get_major_version(version): """ :param version: the version of edge :return: the major version of edge """ return version.split('.')[0]
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def _create_docker_command(*args, **kwargs): """ Returns a string with the ordered arguments args in order, followed by the keyword arguments kwargs (in sorted order, for consistency), separated by spaces. For example, ``_create_docker_command('./myprogram', 5, 6, wibble=7, wobble=8)`` retu...
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def xor_string(string: str, xor_int_value=42): """Takes a given string and does an XOR operation on the converted ord() value of each character with the "xor_int_value", which by default is 42 Examples: >>> string2encode = 'Now is better than never.'\n >>> xor_string(string2encode)\n 'd...
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def word_count(text: str, word: str='') -> int: """ Count the number of occurences of ``word`` in a string. If ``word`` is not set, count all words. """ if word: count = 0 for text_word in text.split(): if text_word == word: count += 1 return coun...
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def create_field_matching_dict(airtable_records, value_field, key_field = None, swap_pairs = False): """Uses airtable_download() output to create a dictionary that matches field values from the same record together. Useful for keeping track of relational data. If second_field is `None`, then the dictio...
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def square_area(side): """Returns the area of a square""" side = float(side) if (side < 0.0): raise ValueError('Negative numbers are not allowed') return side**2.0
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import re def string_to_list(s): """Return a list of strings from s where items are separated by any of , ; |""" try: return [text for text in re.split(r'\s*[,;\|]\s*', s) if text] except TypeError: if type(s) == list: return s raise
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def unzip(index, list): """ Returns the item at the given index from inside each tuple in the list. """ return [item[index] for item in list]
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def get_unique_sublist(inlist): """return a copy of inlist, but where elements are unique""" newlist = [] for val in inlist: if not val in newlist: newlist.append(val) return newlist
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from pathlib import Path def get_page_number(filename): """Parses a page number from a filename. Presumes that: The page number is preceded by an underscore The page number is immediately followed by either by `_m`, `_me` or `_se`, or the file extension. Args: file (str):...
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def IsRegionalHealthCheckRef(health_check_ref): """Returns True if the health check reference is regional.""" return health_check_ref.Collection() == 'compute.regionHealthChecks'
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def element_wise_product(X, Y): """Return vector as an element-wise product of vectors X and Y""" assert len(X) == len(Y) return [x * y for x, y in zip(X, Y)]
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import torch def flatten_grads(model): """ Flattens the gradients of a model (after `.backward()` call) as a single, large vector. :param model: PyTorch model. :return: 1D torch Tensor """ all_grads = [] for name, param in model.named_parameters(): all_grads.append(param.grad.view(...
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import base64 def readDataOrPath(dataStr): """ Reads in either base64 data or a path. """ if dataStr.startswith('base64:'): dataPath = None dataContents = base64.b64decode(dataStr[7:]) else: dataPath = dataStr with open(dataStr, 'rb') as stream: dataContents = stream.read() return dataPath, dataConte...
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def get_adjusted_aspect(ax, aspect_ratio): """Adjust the aspect ratio Parameters ---------- ax : :obj:`~matplotlib.axes.Axes` A :obj:`~matplotlib.axes.Axes` instance aspect_ratio : float The desired aspect ratio for :obj:`~matplotlib.axes.Axes` Returns ------- float ...
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def cells_different(cell_a, cell_b, compare_outputs = True): """ Return true/false if two cells are the same cell_a: (obj) JSON representation of first cell cell_b: (obj) JSON representation of second cell compare_outputs: (bool) whether to compare cell outputs, or just inputs """ # check ...
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def get_overlap_region(s1,e1,s2,e2): """0-based system is used (like in Biopython): | INPUT | RETURNS | |-----------------------------|-----------------------------| | | | | s1=3 e1=14 ...
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