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def get_matching_files(url, entry): """Given a search entry returned from PilotClient.get_search_entry, find all of the partial matches in the entry. Partial matches can happen if a base folder matches, but not the files below it. For example: * A url: http://example.com/files/foo * entry with f...
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from pathlib import Path def _template(name): """Read the specified template file.""" template = Path(__file__).parent / 'templates' / name with open(template, 'r') as file: return file.read().strip()
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import click def unstyle_output(msg: str) -> str: """ A thin wrapper around click.unstyle. """ s: str = click.unstyle(msg) return s
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def decode_ber(ber): """ Decodes a ber length byte array into an integer return: (length, bytes_read) - a tuple of values """ ber = bytearray(ber) length = ber[0] bytes_read = 1 if length > 127: bytes_read += length & 127 # Strip off the high bit length = 0 for i ...
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def get_nested_attr(obj, attr, default=None): """Get nested attributes of an object.""" attrs = attr.split(".") for a in attrs: try: obj = getattr(obj, a) except AttributeError: if default: return default else: raise ret...
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def base36encode(number): """Converts an integer into a base36 string.""" ALPHABET = "0123456789abcdefghijklmnopqrstuvwxyz" base36 = '' sign = '' if number < 0: sign = '-' number = -number if 0 <= number < len(ALPHABET): return sign + ALPHABET[number] while numbe...
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def print_network(net, out_f=None): """ Prints the number of learnable parameters. :param net: the network. :type net: :param out_f: file :type out_f: :return: number of learnable parameters. :rtype: int """ num_params = 0 for param in net.parameters(): num_params +=...
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from datetime import datetime def calculate_tz_offset(local_time_str, server_datetime_str): """Given a local_time without date and a server_datetime in UTC, calculate the user's timezone offset in minutes. This is not accurate for all cases, but should be approximately correct for the most common ones. ...
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def std_url(url): """ Standardizes urls by removing protocoll and final slash. """ if url: url = url.split("//")[-1] if url.endswith("/"): url = url[:len(url)-1] return url
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def get_name(metadata): """Return the name of an object based on the dictionary metadata. By preference: long_name, short_name, 'Unnamed' """ name = metadata.get("long_name", None) if name is not None: return name name = metadata.get("short_name", None) if name is not None: retu...
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from typing import Tuple def extract_entitlement(entitlement: str, text: str) -> Tuple[str, str, str, str]: """ Extracts entitlement components from an entitlement string Args: entitlement: The entitlement itself text: The actual reply text Returns: Entitlement components ...
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def extract_name_and_id(user_input): """Determines if the string user_input is a name or an id. :param user_input: (str): input string from user :return: (name, id) pair """ name = id = None if user_input.lower().startswith('id:'): id = user_input[3:] else: name = user_input...
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def bytes2human(n, format='%(value).1f %(symbol)sB'): """ Convert n bytes into a human readable string based on format. symbols can be either "customary", "customary_ext", "iec" or "iec_ext", see: http://goo.gl/kTQMs >>> from datalad.utils import bytes2human >>> bytes2human(1) '1.0 B'...
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def add_integers(a: int, b: int): """Sum two integers Args: a (int): b (int): Returns: int: sum of the integer inputs a and b """ return a + b
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def _card(item): """Handle card entries Returns: title (append " - Card" to the name, username (Card brand), password (card number), url (none), notes (including all card info) """ notes = item.get('notes', "") or "" # Add car...
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def ndbi(swir, red, nir, blue): """ Converts the swir, red, nir and blue band of Landsat scene to a normalized difference bareness index. Source: Zao and Chen, "Use of Normalized Difference Bareness Index in Quickly Mapping Bare from TM/ETM+", IEEE Conference Paper, 2005 DOI: 10.1109/IGARSS.200...
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import click def _log_status(count, model_label): """ Log the output of how many records were created. :param count: Amount created :type count: int :param model_label: Name of the model :type model_label: str :return: None """ click.echo('Created {0} {1}'.format(count, model_labe...
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def s2time( secs: float, show_secs: bool = True, show_fracs: bool = True ) -> str: """Convert seconds to time. Args: secs (float): show_secs (bool): Show seconds (default: True) show_fracs (bool): Show centiseconds (default: True) Returns: ...
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import tempfile def get_spooled_file_object(s3_client, bucket, key): """Get a temporary spooled file object for an S3 object :param s3_client Boto s3_client object to apply :param bucket: Bucket to upload to :param key: key identifying the object within the bucket """ result = tempfile.Spoole...
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from typing import Dict from typing import Optional def get_new_name(attrs: Dict[str, str], mark_name: str = '', name_map: Optional[Dict[str, str]] = None) -> str: """Get new name for a node. Args: attrs (Dict[str, str]): A dict contains attributes of an ONNX node. ...
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def unsigned_Q(num:int) -> int: """Returns unsigned value of signed (or unsigned) 64-bit integer (struct fmt 'Q') """ return num & 0xffffffffffffffff
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from typing import List import re def parse_args(line: str) -> List[str]: """Parse the first line of the program for the command line. This should have the form # cmd: mypy <options> For example: # cmd: mypy pkg/ """ m = re.match('# cmd: mypy (.*)$', line) if not m: ret...
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import hashlib import codecs def hash256_twice(s): """ Hash input with sha256 twice, reverse, encode to hex. """ bh = hashlib.sha256(hashlib.sha256(s).digest()).digest() hh = codecs.encode(bh[::-1], "hex") return hh
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def format_item(item, xmlns, key): """ Format a rss item and return data. This properly format a rss item regarding the xmlns attribute and a key. It returns the data of the item regarding it's key. :param item: A rss item :param xmlns: XML namespace of the rss feed ...
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import re def cwb_escape(inname): """Replace dots with "-" for CWB compatibility.""" return re.sub(r"\.", "-", inname)
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async def create_product(http_client, name="Product", description="Description") -> int: """ Create a new product, assert status code, and return product ID. This is factored into a helper as many tests perform this operation. """ resp = await http_client.post("/products", json={"name": name, "desc...
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def map_range( value: float, in_min: float, in_max: float, out_min: float, out_max: float ) -> float: """Map a value in one range to another.""" if in_max - in_min <= 0.0: raise ValueError("invalid input range") if out_max - out_min <= 0.0: raise ValueError("invalid output range") if...
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def view_capture_stream(telstate, capture_block_id, stream_name): """Create telstate view based on given capture block ID and stream name. It constructs a view on `telstate` with at least the prefixes - <capture_block_id>_<stream_name> - <capture_block_id> - <stream_name> Additionally i...
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import math def calculate_angle(a, b, c): """ Returns angle (a-b-c), in degrees All points are assumed to be locintel.core.datamodel.geo.GeoCoordinate objects """ b_c = math.sqrt((b.lng - c.lng) ** 2 + (b.lat - c.lat) ** 2) a_c = math.sqrt((a.lng - c.lng) ** 2 + (a.lat - c.lat) ** 2) a_b ...
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def attr_proc_title( binary, attrs ): """ Make a process title that has attr:<k>=<v> for set of attributes. """ return "%s %s" % (binary, " ".join( ["attr:%s=%s" % (k, v) for (k, v) in attrs.items()] ))
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def warc_datetime_str(date): """Amendedment to warctools' function to fix non-ISO8601 output.""" iso = date.isoformat() if "." in iso: iso = iso[:iso.find(".")] if "+" in iso: iso = iso[:iso.find("+")] return iso + "Z"
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import json def get_keys(path): """ Given a path to json file, returns the keys Parameters --------- path: path with file name of json file Returns ------- returns: dict of keys """ with open(path) as f: return json.load(f)
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def multiply_two_number(a, b): """ Returns the result of multiplying two numbers """ # unused_var = 'blah' return a * b
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def _find_tusd_object_name(params: list[dict]) -> str: """ Finds the tusd_objekt_navn from a list of parameters :param params: list of workflow parameters :return: tusd_objekt_navn """ for param in params: if param['name'] == 'TUSD_OBJEKT_NAVN': return param['value'] rais...
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def get_access_pdf(pdf_dir): """Gets a PDF file from a directory. Fails if there are multiple PDF files Args: pdf_dir (Path obj): directory containing PDF file """ pdf_files = [f for f in pdf_dir.iterdir() if f.is_file( ) and not f.name.startswith(".") and f.name.endswith(".pdf")] if le...
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def word_flipper(our_string): """ Flip the individual words in a sentence Args: our_string(string): Strings to have individual words flip Returns: string: String with words flipped """ word_list = our_string.split(" ") for idx in range(len(word_list)): word_list[idx]...
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def basal_metabolic_rate(gender, weight, height, age): """Calculate and return a person's basal metabolic rate (bmr) in calories per day. weight must be in kilograms, height must be in centimeters, and age must be in years. """ if gender.upper() == "F": bmr = 447.593 + 9.247 * weight + 3.098...
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def associative_backdate(now, backdate): """Correct non-associative relative-delta month math :param now: datetime start point :param backdate: relativedelta value to move back from now. Asking for a relative delta back in time for a period of months and then adding the same number of months does ...
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import base64 def base64_2_str(base64_encode): """ Args: base64_encode: base64编码str Returns: str(utf-8) """ base64_decode = base64.b64decode(base64_encode).decode('utf-8') return base64_decode
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import json def get_inline_policies(iam_client, role_arn): """ Get inline policies in for a role """ inline_policies = iam_client.list_role_policies(RoleName=role_arn) return [ json.dumps(iam_client.get_role_policy(RoleName=role_arn, PolicyName=policy).get("PolicyDocument", )) ...
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import re def is_data_csv(fname): """Checks if a file is a data csv""" return re.search(r"^iter_(\d+).csv$", fname) is not None
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from pathlib import Path def AbsolutePath(*args, **kargs) -> Path: """Create an absolute path (useful as argument 'type')""" return Path(*args, **kargs).absolute()
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def prepare_dict(hermes_dict): """ Prepare a rhasspy type like dict from a hermes intent dict """ intent = hermes_dict["intent"]["intentName"] out_dict = {} out_dict.update({"slots": {s["slotName"]:s["rawValue"] for s in hermes_dict["slots"]}}) out_dict["intent"] = {"name": intent} retur...
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def _merge_dicts(*dicts, **opts): """ The standard dictionary merge idiom, with a twist: an *opts* keyword dictionary. """ target = opts for d in dicts: target.update(d) return target
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def _find_AP_and_RL_diameter(major_axis, minor_axis, orientation, dim): """ This script checks the orientation of the and assigns the major/minor axis to the appropriate dimension, right- left (RL) or antero-posterior (AP). It also multiplies by the pixel size in mm. :param major_axis: major ellipse axi...
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def yesno(value): """Convert 0/1 or True/False to 'yes'/'no' strings. Weka/LibSVM doesn't like labels that are numbers, so this is helpful for that. """ if value == 1 or value == True: return 'yes' return 'no'
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import collections def GetTurnStats(game_results): """Returns a histogram of game lengths (in rounds played).""" hist = collections.Counter() for game_result in game_results: hist[game_result.num_rounds_played] += 1 return hist
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def vcross(self, labxr="", labyr="", labzr="", labx1="", laby1="", labz1="", labx2="", laby2="", labz2="", **kwargs): """Forms element table items from the cross product of two vectors. APDL Command: VCROSS Parameters ---------- labxr, labyr, labzr Label assigned to X, Y, and Z-...
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def _GetWinLinkRuleNameSuffix(embed_manifest): """Returns the suffix used to select an appropriate linking rule depending on whether the manifest embedding is enabled.""" return "_embed" if embed_manifest else ""
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def get_lname_for_statedict(lname): """ Convert layer name into the form used to address the weight tensor of the module through model_statedict(). """ lname_bits= lname.split('_') lname_bits.append('weight') lname_for_statedict= '.'.join(lname_bits) return lname_for_statedict
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def find_command(command, all_commands): """ Looks up a command in a list of dictioraries, returns a dictionary from a list :param command: Command to look up :param all_commands: list of all commands :return: dictionary """ for item in all_commands: if item["command"] == command: ...
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import hashlib def compute_md5_hex(data): """Return the hex MD5 of the data""" h = hashlib.md5() h.update(data) return h.hexdigest()
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def field_to_list(row, key): """ Transforms key in row to a list. We split on semicolons if they exist in the string, otherwise we use commas. Args: row: row of data key: key for the field we want Reutrns: row: modified row """ if not row[key]: return row ...
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def active_queues(state): """List the task queues a worker is currently consuming from.""" if state.consumer.task_consumer: return [dict(queue.as_dict(recurse=True)) for queue in state.consumer.task_consumer.queues] return []
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def FindEndOfExpressionInLine(line, startpos, depth, startchar, endchar): """Find the position just after the matching endchar. Args: line: a CleansedLines line. startpos: start searching at this position. depth: nesting level at startpos. startchar: expression opening character. ...
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def alpha_waste(lyambda_cond_waste_avrg, rho_cond_waste_avrg, mu_cond_waste_avrg, W_mass, n_pipe_waste, L_waste): """ Calculates the coefficent of heat transfer(alpha) from steam to wall of pipe. Parameters ---------- lyambda_cond_waste_avrg : float The thermal conducivity of condensate, [W ...
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import json def post_to_query_string(dico): """ Transform a dict to a query string >>> post_to_query_string({'foo': 'bar', 'where': {'foo': 'bar'}}) ?foo=bar&where={"foo": "bar"} :params dico the dico to convert """ querystring = "?" for key in dico: querystring ...
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def human_readable_resolution(r_ms: int) -> str: """ Resolves a resolution in milliseconds to a human readable string :param r_ms: resolution in milliseconds :return: human readable resolution """ switcher = { 60000: '1 Minute', 180000: '3 Minutes', 300000: '5 Minutes', ...
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def split_by_timestamp(xyzrph: dict): """ Takes a Kluster xyzrph (the dictionary object that stores uncertainty, offsets, angles, etc. settings) and returns a new dictionary for each timestamped entry. Parameters ---------- xyzrph dict of offsets/angles/tpu parameters from the fqpr inst...
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def ensure_overlap(lh, mor, expr): """ ensures label overlap with weights and expression matrix Args: lh (pandas DataFrame): sparse DataFrame indicating likelihood for regulators mor (pandas DataFrame): sparse DataFrame indicating mode or regulation for transcription factors expr (:obj:...
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def clear_handlers(logger): """ Clear all handlers from logger Parameters ---------- logger : logging.logger Logger to remove all handlers from Returns ------- logger : logging.logger Logger with all handlers removed """ handlers = logger.handlers.copy() for...
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def google_api_query(query_dict: dict) -> str: """Join given query args into one string. Return query string in format required by googlapis: https://developers.google.com/books/docs/v1/using#WorkingVolumes """ if not query_dict: return "" def allowed_google_item(): if item[1] ...
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def accuracy(y_hat, y): """Get accuracy.""" return (y_hat.argmax(axis=1) == y).mean().asscalar()
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def add_spaces(x): """Add four spaces to every line in x This is needed to make html raw blocks in rst format correctly """ y = '' if isinstance(x, str): x = x.split('\n') for q in x: y += ' ' + q return y
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def format_path(path): """ (str) -> str Make sure that path ends with a backslash '/' """ return path if path.endswith('/') else path + '/'
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def range_overlap(ranges): """Return common overlap among a set of [left, right] ranges.""" lefts = [] rights = [] if ranges: for (left, right) in ranges: lefts.append(left) rights.append(right) max_left = max(lefts) min_right = min(rights) if min...
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import torch def cr_matrix_vector_product(m: torch.Tensor, x: torch.Tensor) -> torch.Tensor: """Returns the product of a complex matrix and a real vector. :param m: Matrix as ``(*, m, n, 2)`` tensor. :param x: Vector as ``(*, n)`` tensor. :return: Result as ``(*, m, 2)`` tensor. """ xr = x.un...
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def restrict_chains(data, k): """Restrict data to people with at least k rows. Parameters ---------- data : pandas.DataFrame The `data` from US to be subsetted. k : int The minimum number of measurements needed for a person to be kept. Returns ------- data : pandas.DataF...
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import math def xy_yaw_from_quaternion(quat): """Calculate the yaw angle in the xy plane from a rotation quaternion. :param quat: A unit quaternion representing the :type quat: Any container that has numerical values in index 0, 1, 2 and 3 :return: The yaw angle in radians projected on the xy plane ...
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import re def compile_routes(dynamic_routes): """Compiles the regexes in the routes table.""" routes2 = [] for (verb, path_pattern, handler_func) in dynamic_routes: compiled_path = re.compile("^" + path_pattern + "/*" + "$") entry = (verb, path_pattern, compiled_path, handler_func) ...
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def path_string(obj, **kwargs): """return physical path as a string""" return "/".join(obj.getPhysicalPath())
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def fancy_vector(v): """ Returns a given 3-vector or array in a cute way on the shell, if you use 'print' on the return value. """ return "\n / %5.2F \\\n" % (v[0]) + \ " | %5.2F |\n" % (v[1]) + \ " \\ %5.2F /\n" % (v[2])
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import math def angle_trunc(the_angle): """ Truncate the angle between [0, 360) Arguments: the_angle {float} -- angle Returns: float -- Angle between [0,360)] """ while the_angle < 0.0: the_angle += math.pi * 2 return the_angle
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def loadOutputList(expt_name,outputType): """Loads a file containing all file names with a specified output data into a local list Args: expt_name (String): Name of experiment (which contains how many ever simulation output files) outputType (String): molpos or simtime. Determines which set...
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def _compose_middleware(method, middleware): """Apply the given ServiceMiddleware to the provided method and return an InvocationHandler. Args: method: instance method middleware: list of ServiceMiddleware Returns: InvocationHandler """ def base_handler(method, args): ...
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def remove_stopwords(df, file, path='', column = "Word"): """ Remove stopwords from a dataframe choosing a specific column in which to remove those words Parameters: ----------- df : pandas dataframe Dataframe of counts per word per user file : string Name of file that conta...
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def fraunhofer_distance(d=1.0, wavelen=550e-6): """computes the Fraunhofer distance from a diffracting aperture. It is the limit between the near and far field Parameters ---------- d : float largest dimension of the aperture. i.e. aperture width/diameter (in mm) wl : float ...
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def clean_keys_of_slashes(record): """ Replaces the slashes found in a dataset keys with underscores :param record: list containing a couple of dictionaries :return: record with keys without slashes """ for key in list(record): value = record[key] if '/' in key: # rep...
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def add(n1, n2): """Adds the 2 given numbers""" return n1 + n2
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def remove_max_edge_from_cycle(tree, cycle): """ Remove the max-weighted edge from a *cycle* which is contained in the given *tree*. """ cycle = sorted(cycle, key=lambda edge: int(edge.weight), reverse=True) return tree.remove(cycle[0])
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def _calculate_positives_negatives(target_details): """ Takes expected and actual target values, generating true and false positives and negatives, including the actual correct # of positive and negative values. """ true_positive = 0 true_negative = 0 false_negative = 0 false_positive =...
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def read_network(file): """ Read a (switched) Boolean network from a text file: Line 1: number of state variables Line 2: number of control inputs Line 3: number of sub-networks Line 4: transition matrix of the first sub-network (linear representation of a logical matrix) ...
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def read_keywords(args): """This function reads the keywords from the input file and creates: - a dictionary where the key is the old name and the value is the new name, these keywords will be further processed. - a list of keywords which will not be processed, typically keywords with argument(s)...
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def _check_pixel(tup): """Check if a pixel is black, supports RGBA""" return tup[0] == 0 and tup[1] == 0 and tup[2] == 0
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def clean_sort_param(request, date_sort='created'): """ Handles empty and invalid values for sort and sort order. 'created' by ascending is the default ordering. """ sort = request.GET.get('sort', date_sort) order = request.GET.get('order', 'asc') if sort not in ('name', 'created', 'nominat...
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def write_variable_length(value): """ Write a variable length variable. Parameters ---------- value : bytearray Value to be encoded as a variable of variable length. Returns ------- bytearray Variable with variable length. """ result = bytearray() result.in...
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def date_str2csv_date(date_str): """Utility function to convert a JSON date string into a date that is consistent with the representation in the csv files we work with. Args: date_str - the Python date string Returns: A date string formatted for csv """ return ''.join([date_str[:...
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def affine_transformation(anchor_x, x0, x1, anchor_y, y0, y1): """Construct an affine coordinate transform and its inverse. From a GDAL-style specification of the parameters of an affine transformation, construct both the affine function that maps integer cell indices to the center points of the corres...
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import json def get_json(file): """ Load JSON data into memory file: the path to the data file """ with open(file) as json_file: json_data = json.load(json_file) json_file.close() return json_data
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def select_from_arxivcs_mag(sconn, scur, paper_id): """ Queries the sqlite3 table unpaywall on paper_id, returns the pdf_url (can be None)""" # cur = conn.cursor() query = """ SELECT pdf_url FROM arxivcs_mag WHERE paper_id = '{}' """.format(paper_id) scur.execute(query) # Only get one ...
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def cleanup_url(url: str) -> str: """Cleans up the text to be a valid URL. Returns: str: The cleaned up URL. """ url = url.replace(" ", "-") if url.startswith("http://") or url.startswith("https://"): return url else: return f"https://{url}"
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def map_code_to_status(http_code: int): """Maps HTTP code to human-readable descriptive string""" if 100 <= http_code <= 199: return 'INFO' elif 200 <= http_code <= 299: return 'SUCCESS' elif 300 <= http_code <= 399: return 'REDIRECT' elif 400 <= http_code <= 499: ret...
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import time def string_to_date(date_string): """ Convert a formatted string into a date.""" return time.strptime(date_string, "%Y/%m/%d:%H:%M:%S")
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def print_value(v): """double quote v if v is a string, return str(v) otherwise""" if isinstance(v, str): quoted = v.replace('"', r'\"') return f'"{quoted}"' else: return str(v)
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def quadratic_probe(h, i, m): """ Finds a possible next position using quadratic probing Note that there are many different ways of doing this, such as with a formula in the form ai + bi^2. This is just a simple example Quadratic hashing reduces primary clustering: linear probing may lead to la...
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import math def translate_key(key): """ Translate from MIDI coordinates to x/y coordinates. """ vertical = math.floor(key / 16) horizontal = key - (vertical * 16) return horizontal, vertical
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def parse_email(ldap_entry): """ Returns the user's email address from an ldapentry """ if "mail" in ldap_entry: email = ldap_entry['mail'][0] else: email = ldap_entry['uid'][0] + "@pdx.edu" return email
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def yes_or_no(question): """Prompt for yes/no question""" while True: reply = str(input(question+' (y/n): ')).lower().strip() if reply in ['y', 'yes']: return True if reply in ['n', 'no']: return False
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def filter_labels_by_class(obj_labels, classes): """Filters object labels by classes. Args: obj_labels: List of object labels classes: List of classes to keep, e.g. ['Car', 'Pedestrian', 'Cyclist'] Returns: obj_labels: List of filtered labels class_mask: Mask of labels to k...
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def extract_glob_pattern(path_arg: str) -> tuple: """Extract glob pattern from a path""" if not path_arg: return None, None base_path = pattern = None if '*' in path_arg: # we have globbing in src path path_components = path_arg.split("/") base_path_arr = [] # let's establish the base ...
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