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def sum(n): """ Returns the sum of integers between 1 and `n` (inclusive). This implementation uses recursion. """ if n == 1: return 1 elif n > 1: return n + sum(n - 1)
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from typing import Optional import re def read_commit(version_data: str) -> Optional[str]: """Parse commit string from version data @param version_data: Contents of version file @return: commit, or None if not found """ p = re.compile('.*Commit: ([^\n\r]*)', re.DOTALL) match = p.match(version_...
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def z2lin(array): """dB to linear values (for np.array or single number)""" return 10 ** (array / 10.)
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def model_field_attr(model, model_field, attr): """ Returns the specified attribute for the specified field on the model class. """ fields = dict([(field.name, field) for field in model._meta.fields]) return getattr(fields[model_field], attr)
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def count_models(block): """Count models in structure file block. :param block: PDBx data block :type block: [str] :return: number of models in block :rtype: int """ atom_obj = block.get_object("atom_site") model_num = [] for i in range(atom_obj.row_count): tmp = atom_ob...
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def hex_to_bin(txt: str) -> str: """Convert hexadecimal string to binary string.Useful for preprocessing the key and plaintext in different settings.""" return bin(int(txt,16))[2:]
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def clean_lemma(lemma: str, pos: str) -> str: """Cleans whitespace and special symbols Args: lemma: Raw token lemma. pos: Lemma POS. Returns: Clean lemma. """ out_lemma = lemma.strip().replace(" ", "").replace("_", "").lower() if pos != "PUNCT": if out_...
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def to_byte(val): """Cast an int to a byte value.""" return val.to_bytes(1, 'little')
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from typing import Tuple import re def replace_code( begin_delim: str, end_delim: str, content: str, new_code: str ) -> Tuple[str, int]: """Replaces text delimited by `begin_delim` and `end_delim` appearing in `content`, with `new_code`. Returns new string and number of matches made.""" return re.subn...
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import requests def get_root_domains(url, filename): """ Updates root domain file. :param url: URL of the root domains list. :param filename: File name to write the list. """ r = requests.get(url) with open(filename, 'w') as f: f.write(r.text) return True
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def create_hf(geom): """Create header and footer for different types of geometries Args: geom (str): geometry type, e.g., polygone """ if geom == "polygone": header = """ { "type": "FeatureCollection", "features": [ { "type": "Feature", ...
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import math def string_to_array(s): """Convert pipe separated string to array.""" if isinstance(s, str): out = s.split("|") elif math.isnan(s): out = [] else: raise ValueError("Value must be either string of nan") return out
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import math import hashlib def adventcoin_mine(salt, zeros, prob=0.99): """MD5-hashes salt + counter, increasing counter until hash begins with a given number of 0's in HEX, or until maximum value is reached :param salt: string to append before countes :param zeros: number of zeros to search for :...
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def _format_cached_grains(cached_grains): """ Returns cached grains with fixed types, like tuples. """ if cached_grains.get("osrelease_info"): osrelease_info = cached_grains["osrelease_info"] if isinstance(osrelease_info, list): cached_grains["osrelease_info"] = tuple(osrelea...
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def unfold_fields(lines): """Unfold fields that were split over multiple lines. Returns: A list of strings. Each string represents one field (a name/value pair separated by a colon). >>> unfold_fields("foo \n bar \n baz \nbiz \nboz ") ['foo bar baz ', 'biz ', 'boz...
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def analyzer(klass): """Return an instance of the CUT with some defaults.""" a = klass( start_states=["In Progress", ], commit_states=["Selected", "Created"], end_states=["Done", ] ) return a
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def map_symbols_to_currencies(currencies): """ Create dictionary where key is symbol of currency and value is currency itself :param list currencies: List of dictionaries with data about many currencies :return: Dictionary with symbols and currencies :rtype: dict :raises KeyError: ...
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import yaml def load_configs(s: str) -> dict: """Load config from string.""" return yaml.load(s, Loader=yaml.FullLoader)
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def extract_text_body(parsed_email): """ Extract email message content of type "text/plain" from a parsed email Parameters ---------- parsed_email: email.message.Message, required The parsed email as returned by download_email Returns ------- string string conta...
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from typing import List def demand_satisfied(people_after: List) -> List[bool]: """Verifies that each person gets the appropriate number of appointments. We assume that scheduling occurs over a single week. Thus, people in the `1x` cohort get one test, people in the `2x` cohort get two tests, and peo...
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def progress_to_dict(path: str) -> dict: """ Converts a Delphin progress file into a dict. :param path: path to folder :return: converted progress dict """ file_obj = open(path + '/progress.txt', 'r') lines = file_obj.readlines() file_obj.close() progress_dict = {'simulation_time'...
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import torch def round(tensor, decimal_places): """ Round floats to the given number of decimal places. :param tensor: input tensor :type tensor: torch.Tensor :param decimal_places: number of decimal places :types decimal_places: int :return: rounded tensor :rtype: torch.Tensor ""...
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def split_parts(msg): """Splits a key=value pair into a tuple.""" index = msg.find("=") return (msg[:index], msg[index+1:])
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import mimetypes def guess_extension(mime): """Shortcut for getting extension to a given mime string. The parameter mime can be None""" return mimetypes.guess_extension(type=mime or "")
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import re def idify(utext): """Make a string ID-friendly (but more unicode-friendly)""" utext = re.sub(r'[^\w\s-]', '', utext).strip().lower() utext = re.sub(r'[\s-]+', '-', utext) if not len(utext): # Headers must be non-empty return '_' return utext
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def my_func02(num01, num02): """ 返回两个参数的和 :param num01: 数字1 :param num02: 数字2 :return: 两个数字的和 """ return num01 + num02
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def map_msa_names(df, msa_lookup): """ Helper function to handle known MSA name changes/inconsistencies :param df: A pandas dataframe, BLS OEWS data set :param msa_lookup: a dictionary containing MSA code to peer type lookup :return df: A pandas dataframe """ df['area_title'] = df['area'].map...
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def legend(is_legend_show=True, legend_orient="horizontal", legend_pos="center", legend_top='top', legend_selectedmode='multiple', **kwargs): """ Legend component. Legend component shows symbol, color and name of different series. You can click ...
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def get_average(numbers): """ Args: numbers (list): A list of floats. Returns: float: The average of the floats in numbers list. """ total = 0.0 for number in numbers: total += number return total/ len(numbers)
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def set_hidden_measurement_lists_from_Ns_Nv(num_nodes, Ns, Nv, list_bus_id_power_hiding_priority=None, list_bus_id_voltage_hiding_priority=None): """ Returns the list of the hidden power bus ids and a list of hidden voltage ids :param num_nodes: number of buses in the grid :param Ns: Number ...
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def denormalize_m11(x): """Inverse of normalize_m11.""" return (x + 1) * 127.5
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def test_row(dataframe): """ test if dataframe contains at least one row Parameters ---------- dataframe: pandas dataframe Raises ------ ValueError If number of row is smaller than 1, raise ValueError Returns ------- is_valid: boolean True if greater than 1...
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def _get_elem_at_rank(rank, data, n_negative, n_zeros): """Find the value in data augmented with n_zeros for the given rank""" if rank < n_negative: return data[rank] if rank - n_negative < n_zeros: return 0 return data[rank - n_zeros]
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def pythonize_yang_name(name): """ Convert a name like "interface-name" to "InterfaceName" or "interface" to "Interface """ if '-' in name: py_name = '' sub_components = name.split('-') for s in sub_components: py_name += s.capitalize() return py_name ...
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import requests def get_tv_episode_detail(key, id, season, episode, language="en-US"): """ function get_tv_episode_detail Get the TV episode details by id. inputs: key - TMDB API key. id - id of the movie season - Season of the tv series (INT) ...
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import torch def _kl_divergence_q_prior_normal(mu, logvar, per_dim=False): """ Returns KL-divergence between the variational posterior $q_{\phi}(z|x)$ and the isotropic Gaussian prior $p(z)$. This forms the 'regularization' part of the ELBO. If the variational posterior is taken to be normal ...
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def get_blue_green_from_app(app): """ Returns the blue_green object if exists and it's color field if exists >>> get_blue_green_from_app({}) (None, None) >>> get_blue_green_from_app({'blue_green': None}) (None, None) >>> get_blue_green_from_app({'blue_green': {}}) (None, None) >>...
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def get_last_conv_layer_name(model_keras): """ Search for the last convolutional layer Args: model_keras: A keras model object Returns: Name of the layer (str) """ for layer in reversed(model_keras.layers):#loop in reverse order # Select closest 4D layer to the end of th...
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def flatten_args(args): """ Given a dictionary of arguments, produce a string suitable for inclusion in a command line, such as "--name1 value1 --name2 value2" """ return " ".join(["%s %s" % (name, value) for name, value in args.iteritems()])
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def _decimal_lshift_exact(n, e): """ Given integers n and e, return n * 10**e if it's an integer, else None. The computation is designed to avoid computing large powers of 10 unnecessarily. >>> _decimal_lshift_exact(3, 4) 30000 >>> _decimal_lshift_exact(300, -999999999) # returns None ""...
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def calculate_polynomial_derivative_term(coefficient, variable, order): """Calculates the derivative of the nth order term of a polynomial. Args: coefficient (float): The coefficient of the nth order term in the polynomial variable (float): float to plug in for the variable in the p...
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def single_line(line, report_errors=True, joiner='+'): """Force a string to be a single line with no carriage returns, and report a warning if there was more than one line.""" lines = line.strip().splitlines() if report_errors and len(lines) > 1: print('multiline result:', lines) return joiner...
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import unittest def combined_suites(*test_suites): """Combines several suites into one""" combined_suite = unittest.TestSuite(test_suites) return combined_suite
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import unicodedata def strip_diacritics_2(input_string: str) -> str: """Return a copy of `input_string` without diacritics, such that strip_diacritics('skříň') == 'skrin' """ trans_dict = {char: int(unicodedata.decomposition(char).split()[0], base=16) f...
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def liquidViscosity(T, lVP): """ liquidViscosity(T, lVP) liquidViscosity (centipoise) = 10^(A + B/T + C*T + D*T^2) Parameters T, temperature in K vPP, A=lVP[0], B=lVP[1], C=lVP[2], D=lVP[3] A, B, C, D and E are regression coefficients Returns liquid viscosity...
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def valid_xml_char_ordinal(c): """Filters out certain bytes so that XML files contains valid characters. XML standard defines a valid character as: Char ::= #x9 | #xA | #xD | [#x20 - #xD7FF] | [#xE000 - #xFFFD] | [#x10000 - #x10FFFF] Args: c: Character to be checked Returns: ...
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def add_vp_vs(df): """Calculates the Vp and Vs for a las file Args: df (Pandas.DataFrame): input dataframe MUST CONTAIN `DTCO` and `DTSM` Returns: pandas.DataFrame: input dataframe with vp and vs calculated """ df['Vp'] = (1000000 / df['DTCO']) / 3.281 df['Vs'] = (1000000 / df['...
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def calculate_simpson_index(set1, set2): """Calculates the Simpson index of two sets""" size_intersection = float(len(set1.intersection(set2))) size_smaller_set = min(float(len(set1)), float(len(set2))) return size_intersection / size_smaller_set
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def return_label(file_path): """ Extract label from filename Inputs: --------------- file_name: Source of raw wav signal str Outputs: --------------- y: target as string """ if "silence" in file_path.lower(): y = 'silence' e...
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from typing import List def get_sum_of_elements(lst: List) -> int: """Sum of list.""" return sum(lst)
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from typing import Optional def get_location_id(data: dict) -> Optional[str]: """ Returns location_id from a data dictionary, or defaults to None :param dict data: The event data :return str|None: A string containing the location id, or None """ try: return data["event"]["data"]["new"]...
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import re def get_cell_barcode(record, cell_barcode_pattern): """Return the cell barcode in the record name. Parameters ---------- record : screed record screed record containing the cell barcode cell_barcode_pattern: regex pattern cell barcode pattern to detect in the record name...
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from typing import List def spooler_pids() -> List[int]: """Returns a list of all spooler processes IDs.""" return []
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import base64 def encode_file_to_base64(fpath_in, prefix): """ encode_file_to_base64: gets base64 encoding of file Args: fpath_in (str): path to file to encode prefix (str): file data for encoding (e.g. 'data:image/png;base64,') Returns: base64 encoding of file """ ...
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def le_bytes_to_int(as_bytes: bytes, signed: bool) -> int: """Converts a little endian byte array to an integer. :param as_bytes: A little endian encoded byte array integer. :param signed: Flag indicating whether integer is signed. """ return int.from_bytes(as_bytes, byteorder='little', signed=sig...
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import string def base26(x, _alphabet=string.ascii_uppercase): """Return positive ``int`` ``x`` as string in bijective base26 notation. >>> [base26(i) for i in [0, 1, 2, 26, 27, 28, 702, 703, 704]] ['', 'A', 'B', 'Z', 'AA', 'AB', 'ZZ', 'AAA', 'AAB'] >>> base26(344799) # 19 * 26**3 + 16 * 26**2 + 1 ...
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def pgcd(a, b): """Renvoie le Plus Grand Diviseur Communs des entiers ``a`` et ``b``. Arguments: a (int) : un nombre entier b (int) : un nombre entier """ if a < 0 or b < 0: return pgcd(abs(a), abs(b)) if b == 0: if a == 0: raise ZeroDivisionError( ...
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from typing import Dict from typing import Tuple from typing import Set def prepare_senses_index_for_search(senses_dict: Dict[str, Dict[str, Tuple[tuple, Tuple[int, int]]]]) -> \ Dict[str, Set[str]]: """ Build a search index for a fast selection of sentence candidates, which contain some sense from the Ru...
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from typing import Sequence def to_sequence(obj): """Convert an object to sequence. Parameters ---------- obj : `object` Returns ------- `collections.Sequence` Examples -------- >>> to_sequence(None) () >>> to_sequence(1) (1,) >>> to_sequence('str') ('str...
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def select(t, *columns): """ Select columns from table >>> t = Symbol('t', 'var * {x: int, y: int, z: int}') >>> select(t, t.x, t.z) t[['x', 'z']] """ return t[[c._name for c in columns]]
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from typing import Dict import pickle def _from_checkpoint( fname: str='checkpoint.pkl') -> Dict: """ Load a checkpoint file """ with open(fname, 'rb') as f: checkpoint = pickle.load(f) return checkpoint
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from typing import List from typing import Dict from typing import Any def _transform_dto_list_to_list_of_dicts(dto_list) -> List[Dict[str, Any]]: """ Given a list of DTO objects, this function returns a list of dicts, that can be passed to jsonify function. """ return [vars(dto_obj) for dto_obj in dt...
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def join_rows(rows, joiner=' '): """ Given a series of rows, return them as a single row where the inner edge cells are merged. By default joins with a single space character, but you can specify new-line, empty string, or anything else with the 'joiner' kwarg. """ rows = list(rows) fixed_row = rows...
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def parse_float(val): """parses string as float, ignores -- as 0""" if val == '--': return 0 return float(val)
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def running_mean(l, N): """From a list of values (N), calculate the running mean with a window of (l) items. How larger the value l is, the more smooth the graph. """ sum = 0 result = list(0 for x in l) for i in range(0, N): sum = sum + l[i] result[i] = sum / (i + 1) for i ...
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def get_outbreaks(flowmat, incidence, R0=2.5, asymf=10, attenuate=1.0): """ Calculate the probabilities of outbreak for all regions :param flowmat: Arriving passengers row -> column :param incidence: fraction of infectious in the populations :param R0: Basic reproduction number :param asymf: ho...
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def bin_to_hex(x): """Convert Binary to Hex.""" y = hex(int(x, 2))[2:] if len(y) < 8: y = (8 - len(y)) * "0" + y return y
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import re def process_tweets(text): """Exclude mentions, urls, and html reference characters in a string using regular expression""" text = re.sub("(\@|https:\/\/)\S+", "", text) # remove mentions and urls text = re.sub(r"&[a-z]+;", "", text) # exclude html reference characters return text
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def f90bool(s): """Convert string repr of Fortran logical to Python logical.""" assert type(s) == str try: s_bool = s[1].lower() if s.startswith('.') else s[0].lower() except IndexError: raise ValueError('{0} is not a valid logical constant.'.format(s)) if s_bool == 't': re...
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from functools import cmp_to_key def argsort(mylist, comp=None): """Returns the indices that sort a list. Parameters ---------- mylist : list of objects List to sort. comp : function, optional A comparison function used to compare two objects in the list. Defaults ...
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from typing import Optional import torch def file2ckpt(path: str, device: Optional[str] = None) -> dict: """ Load the ckpt file into a dictionary to restart a past simulation. It is a thin wrapper around torch.load. Args: path: A string specifying the location of the ckpt file (required) ...
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from typing import Sequence from typing import Sized def are_none(sequences: Sequence[Sized]) -> bool: """ Returns True if all sequences are None. """ if not sequences: return True return all(s is None for s in sequences)
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def concat(str_one, str_two): """ Returns the concatenation of 2 strings. A string with null value is considered as an empty string. """ if not str_one: str_one = "" if not str_two: str_two = "" return str_one + str_two
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from shutil import which def is_tool(name): """Check whether `name` is on PATH and marked as executable.""" # from whichcraft import which return which(name) is not None
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import functools def cached(func): """Decorator to cache the result of a function call.""" func.cache = {} @functools.wraps(func) def wrapper(*args, **kwargs): if kwargs: key = args, frozenset(kwargs.items()) else: key = args if key not in func.cache: ...
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import re from datetime import datetime def _get_iso_date(date_string: str) -> str: """ convert date from the form 1/22/2021 13:28:27 to iso format """ regex = r'\d{1,2}/\d{1,2}/\d{4} \d{1,2}:\d{1,2}:\d{1,2}' found_list = re.findall(regex, date_string) if found_list: date_value = datetime.strp...
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def remove_erroneous_blocks(blocks, delta_time=2.0, n_blocks=3): """ Remove sessions with erroneous data due to a NeuroPsy Research App malfunction. The error causes block data to be duplicated and the values for df1 & df2 multiplied again by 100. The duplicated blocks are identified by comparing their time...
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def get_sitemap(app, excludes=("/", "/static/<path:filename>")): """Returns a sitemap for the given application. Args: app (flask.Flask): Application to be scanned. excludes (tuple): Tuple of endpoints to be hidden. Returns: list: Returns a list containing valid endpoint urls and ...
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def estimate_infectious_rate_constant(events, t_start, t_end, kernel_integral, count_events=None): """ Returns estimation of infectious rate for given events on...
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def survey_media(instance, filename): """Return an upload path for survey media.""" if not instance.survey.id: instance.survey.save() return 'survey/{0}/{1}'.format(instance.survey.id, filename)
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import requests def check_main_service_healthcheck(SVC_URL): """ Check the main service url health. Returns True of False based on HTTP response code""" try: r =requests.get(SVC_URL+'/NexTrip') if r.status_code ==200: return True else: return False except Ex...
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from textwrap import dedent import inspect def get_func_code(f): """Get the code of function f without extra indents""" return dedent(inspect.getsource(f))
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def mmedian(lst): """ get the median value """ sortedLst = sorted(lst) lstLen = len(lst) if lstLen==0: return 0.0 index = (lstLen - 1) // 2 if (lstLen % 2): return sortedLst[index] else: return (sortedLst[index] + sortedLst[index + 1])/2.0
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def _format_spreadsheet_headers(token): """ Return formatted authorization headers for further interactions with spreadsheet api. """ return { "Authorization": f"Bearer {token}" }
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import re def getFilename(name): """Get a filename from given name without dangerous or incompatible characters.""" # first replace all illegal chars name = re.sub(r"[^0-9a-zA-Z_\-\.]", "_", name) # then remove double dots and underscores while ".." in name: name = name.replace('..', '...
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from pathlib import Path def _get_old_file(new_file: Path) -> Path: """Return the same file without the .new suffix""" assert new_file.name.endswith('.new') # noqa return new_file.with_name(new_file.stem)
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def xor_fixed_buffers(buf1, buf2): """ Creates XOR buffered string from two hex string buffers :param buf1: hex encoded string :param buf2: hex encoded string :return: xor hex encoded string """ # Convert hex to bytearray decoded_hex_buf1 = bytearray.fromhex(buf1) decoded_hex_buf2 =...
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def previous(some_list, current_index): """ Returns the previous element of the list using the current index if it exists. Otherwise returns an empty string. """ try: return some_list[int(current_index) - 1] # access the previous element except: return ''
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def get_truck(client, truck_id): """ returns the truck specified. :param client: The test client to make the request with :param truck_id: The id of the truck to find :return: truck with id=id """ return client.get(f'/api/trucks/{truck_id}')
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def ros_service_response_cmd(service, result, _id=None, values=None): """ create a rosbridge service_response command object a response to a ROS service call :param service: name of the service that was called :param result: boolean return value of service callback. True means success, False failu...
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def escapeAttrJavaScriptStringDQ(sText): """ Escapes a javascript string that is to be emitted between double quotes. """ if '"' not in sText: chMin = min(sText); if ord(chMin) >= 0x20: return sText; sRet = ''; for ch in sText: if ch == '"': sRet += '\\"'...
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def center_scale_to_corners(yx, hw): """Convert bounding boxes from "center+scale" form to "corners" form""" hw_half = 0.5 * hw p0 = yx - hw_half p1 = yx + hw_half return p0, p1
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from typing import Union def get_error_message(traceback: str) -> Union[str, None]: """Extracts the error message from the traceback. If no error message is found, will return None. Here's an example: input: Traceback (most recent call last): File "example_code.py", line 2, in <module> ...
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def read(filepath, readfunc, treant): """Read data from a treant Args: filepath: the filepath to read from readfunc: the read callback treant: the treant to read from Returns: the data """ return readfunc(treant[filepath].abspath)
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import re def is_project_issue(text): """ Issues/pull requests from Apache projects in Jira. See: https://issues.apache.org/jira/secure/BrowseProjects.jspa#all >>> is_project_issue('thrift-3615') True >>> is_project_issue('sling-5511') True >>> is_project_issue('sling') False ...
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def read_input(fpath): """ Read the global input file. Args: fpath (str): Path to the input file to read. Returns: list """ with open(fpath, 'r') as f: return [line.strip() for line in f.readlines()]
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def _cell_fracs_sort_vol_frac_reverse(cell_fracs): """ Sort cell_fracs according to the order of increasing idx and decreasing with vol_frac. Parameters ---------- cell_fracs : structured array The output from dagmc.discretize_geom(). A sorted, one dimensional array, eac...
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import math def fromSpherical(r, theta, phi): """ convert spherical coordinates to 3-d cartesian coordinates """ return r*math.sin(theta)*math.cos(phi), r*math.sin(theta)*math.sin(phi), r*math.cos(theta)
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import torch def cross_product_matrix(v): """skew symmetric form of cross-product matrix Args: v: tensor of shape `[...,3]` Returns: The skew symmetric form `[...,3,3]` """ v0 = v[..., 0] v1 = v[..., 1] v2 = v[..., 2] zero = torch.zeros_like(v0) mat = torch.stack([...
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def is_generator(iterable): """ Check if an iterable is a generator. Args: iterable: Iterable. Returns: boolean """ return hasattr(iterable, '__iter__') and not hasattr(iterable, '__len__')
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