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fudge-py/fudge | fudge/__init__.py | Fake.without_args | def without_args(self, *args, **kwargs):
"""Set the last call to expect that certain arguments will not exist.
This is the opposite of :func:`fudge.Fake.with_matching_args`. It will
fail if any of the arguments are passed.
.. doctest::
>>> import fudge
>>> que... | python | def without_args(self, *args, **kwargs):
"""Set the last call to expect that certain arguments will not exist.
This is the opposite of :func:`fudge.Fake.with_matching_args`. It will
fail if any of the arguments are passed.
.. doctest::
>>> import fudge
>>> que... | [
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>>> import fudge
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fudge-py/fudge | fudge/__init__.py | Fake.with_arg_count | def with_arg_count(self, count):
"""Set the last call to expect an exact argument count.
I.E.::
>>> auth = Fake('auth').provides('login').with_arg_count(2)
>>> auth.login('joe_user') # forgot password
Traceback (most recent call last):
...
As... | python | def with_arg_count(self, count):
"""Set the last call to expect an exact argument count.
I.E.::
>>> auth = Fake('auth').provides('login').with_arg_count(2)
>>> auth.login('joe_user') # forgot password
Traceback (most recent call last):
...
As... | [
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fudge-py/fudge | fudge/__init__.py | Fake.with_kwarg_count | def with_kwarg_count(self, count):
"""Set the last call to expect an exact count of keyword arguments.
I.E.::
>>> auth = Fake('auth').provides('login').with_kwarg_count(2)
>>> auth.login(username='joe') # forgot password=
Traceback (most recent call last):
... | python | def with_kwarg_count(self, count):
"""Set the last call to expect an exact count of keyword arguments.
I.E.::
>>> auth = Fake('auth').provides('login').with_kwarg_count(2)
>>> auth.login(username='joe') # forgot password=
Traceback (most recent call last):
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thespacedoctor/sherlock | sherlock/database.py | database.connect | def connect(self):
"""connect to the various databases, the credientals and settings of which are found in the sherlock settings file
**Return:**
- ``transientsDbConn`` -- the database hosting the transient source data
- ``cataloguesDbConn`` -- connection to the database hosting... | python | def connect(self):
"""connect to the various databases, the credientals and settings of which are found in the sherlock settings file
**Return:**
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thespacedoctor/sherlock | sherlock/database.py | database._setup_tunnel | def _setup_tunnel(
self,
tunnelParameters):
"""
*setup a ssh tunnel for a database connection to port through*
**Key Arguments:**
- ``tunnelParameters`` -- the tunnel parameters found associated with the database settings
**Return:**
- ``... | python | def _setup_tunnel(
self,
tunnelParameters):
"""
*setup a ssh tunnel for a database connection to port through*
**Key Arguments:**
- ``tunnelParameters`` -- the tunnel parameters found associated with the database settings
**Return:**
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thespacedoctor/sherlock | sherlock/database.py | database._checkServer | def _checkServer(self, address, port):
"""Check that the TCP Port we've decided to use for tunnelling is available
.. todo ::
- update key arguments values and definitions with defaults
- update return values and definitions
- update usage examples and text
... | python | def _checkServer(self, address, port):
"""Check that the TCP Port we've decided to use for tunnelling is available
.. todo ::
- update key arguments values and definitions with defaults
- update return values and definitions
- update usage examples and text
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ozgurgunes/django-manifest | manifest/accounts/decorators.py | secure_required | def secure_required(view_func):
"""
Decorator to switch an url from http to https.
If a view is accessed through http and this decorator is applied
to that view, than it will return a permanent redirect to the
secure (https) version of the same view.
The decorator also must check that ``ACCO... | python | def secure_required(view_func):
"""
Decorator to switch an url from http to https.
If a view is accessed through http and this decorator is applied
to that view, than it will return a permanent redirect to the
secure (https) version of the same view.
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ozgurgunes/django-manifest | manifest/accounts/forms.py | identification_field_factory | def identification_field_factory(label, error_required):
"""
A simple identification field factory which enable you to set the label.
:param label:
String containing the label for this field.
:param error_required:
String containing the error message if the field is left empty.
""... | python | def identification_field_factory(label, error_required):
"""
A simple identification field factory which enable you to set the label.
:param label:
String containing the label for this field.
:param error_required:
String containing the error message if the field is left empty.
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ozgurgunes/django-manifest | manifest/accounts/forms.py | RegistrationForm.clean_username | def clean_username(self):
"""
Validate that the username is unique and not listed
in ``defaults.ACCOUNTS_FORBIDDEN_USERNAMES`` list.
"""
try:
user = get_user_model().objects.get(username=self.cleaned_data["username"])
except get_user_model().DoesNot... | python | def clean_username(self):
"""
Validate that the username is unique and not listed
in ``defaults.ACCOUNTS_FORBIDDEN_USERNAMES`` list.
"""
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ozgurgunes/django-manifest | manifest/accounts/forms.py | RegistrationForm.clean_email | def clean_email(self):
"""
Validate that the email address is unique.
"""
if get_user_model().objects.filter(
Q(email__iexact=self.cleaned_data['email']) |
Q(email_unconfirmed__iexact=self.cleaned_data['email'])):
raise forms.ValidationError... | python | def clean_email(self):
"""
Validate that the email address is unique.
"""
if get_user_model().objects.filter(
Q(email__iexact=self.cleaned_data['email']) |
Q(email_unconfirmed__iexact=self.cleaned_data['email'])):
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ozgurgunes/django-manifest | manifest/accounts/forms.py | RegistrationForm.save | def save(self):
"""
Creates a new user and account. Returns the newly created user.
"""
username, email, password = (self.cleaned_data['username'],
self.cleaned_data['email'],
self.cleaned_data['password... | python | def save(self):
"""
Creates a new user and account. Returns the newly created user.
"""
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ozgurgunes/django-manifest | manifest/accounts/forms.py | AuthenticationForm.clean | def clean(self):
"""
Checks for the identification and password.
If the combination can't be found will raise an invalid sign in error.
"""
identification = self.cleaned_data.get('identification')
password = self.cleaned_data.get('password')
if identification a... | python | def clean(self):
"""
Checks for the identification and password.
If the combination can't be found will raise an invalid sign in error.
"""
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ozgurgunes/django-manifest | manifest/accounts/forms.py | EmailForm.clean_email | def clean_email(self):
"""
Validate that the email is not already registered with another user.
"""
if self.cleaned_data['email'].lower() == self.user.email:
raise forms.ValidationError(_(u"You're already known under "
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"""
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"""
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ozgurgunes/django-manifest | manifest/accounts/forms.py | ProfileForm.clean_picture | def clean_picture(self):
"""
Validates format and file size of uploaded profile picture.
"""
if self.cleaned_data.get('picture'):
picture_data = self.cleaned_data['picture']
if 'error' in picture_data:
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"""
Validates format and file size of uploaded profile picture.
"""
if self.cleaned_data.get('picture'):
picture_data = self.cleaned_data['picture']
if 'error' in picture_data:
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OpenEnergyPlatform/oedialect | oedialect/compiler.py | OECompiler.visit_grouping | def visit_grouping(self, grouping, asfrom=False, **kwargs):
""""
TODO:
"""
return {
'type': 'grouping',
'grouping': grouping.element._compiler_dispatch(self, **kwargs)
} | python | def visit_grouping(self, grouping, asfrom=False, **kwargs):
""""
TODO:
"""
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'type': 'grouping',
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OpenEnergyPlatform/oedialect | oedialect/compiler.py | OECompiler.visit_select | def visit_select(self, select, asfrom=False, parens=True,
fromhints=None,
compound_index=0,
nested_join_translation=False,
select_wraps_for=None,
**kwargs):
jsn = {'command': 'advanced/search', 'type': 'sele... | python | def visit_select(self, select, asfrom=False, parens=True,
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**kwargs):
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OpenEnergyPlatform/oedialect | oedialect/compiler.py | OECompiler._label_select_column | def _label_select_column(self, select, column,
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asfrom, column_clause_args,
name=None,
within_columns_clause=True):
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... | python | def _label_select_column(self, select, column,
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name=None,
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emichael/PyREM | pyrem/task.py | cleanup | def cleanup():
"""Stop all started tasks on system exit.
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"""
to_stop = STARTED_TASKS.copy()
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emichael/PyREM | pyrem/task.py | Parallel._aggregate | def _aggregate(self):
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ozgurgunes/django-manifest | manifest/accounts/models.py | upload_to_picture | def upload_to_picture(instance, filename):
"""
Uploads a picture for a user to the ``ACCOUNTS_PICTURE_PATH`` and
saving it under unique hash for the image. This is for privacy
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extension = filename.split('.')[-1].lower()
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ozgurgunes/django-manifest | manifest/accounts/models.py | AccountActivationMixin.activation_key_expired | def activation_key_expired(self):
"""
Checks if activation key is expired.
Returns ``True`` when the ``activation_key`` of the user is expired
and ``False`` if the key is still valid.
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"""
Checks if activation key is expired.
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ozgurgunes/django-manifest | manifest/accounts/models.py | AccountActivationMixin.send_activation_email | def send_activation_email(self):
"""
Sends a activation email to the user.
This email is send when the user wants to activate their
newly created user.
"""
context= {'user': self,
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Sends a activation email to the user.
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ozgurgunes/django-manifest | manifest/accounts/models.py | EmailConfirmationMixin.change_email | def change_email(self, email):
"""
Changes the email address for a user.
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-- ``temporary_email`` -- we are able to set this email address
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"""
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ozgurgunes/django-manifest | manifest/accounts/models.py | EmailConfirmationMixin.send_confirmation_email | def send_confirmation_email(self):
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Sends an email to confirm the new email address.
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ozgurgunes/django-manifest | manifest/accounts/models.py | UserProfileMixin.get_picture_url | def get_picture_url(self):
"""
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ozgurgunes/django-manifest | manifest/accounts/models.py | UserProfileMixin.get_full_name_or_username | def get_full_name_or_username(self):
"""
Returns the full name of the user, or if none is supplied will return
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Also looks at ``ACCOUNTS_WITHOUT_USERNAMES`` settings to define if it
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"""
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contentful-labs/contentful.py | contentful/cda/client.py | Client.validate_config | def validate_config(config):
"""Verify sanity for a :class:`.Config` instance.
This will raise an exception in case conditions are not met, otherwise
will complete silently.
:param config: (:class:`.Config`) Configuration container.
"""
non_null_params = ['space_id', 'a... | python | def validate_config(config):
"""Verify sanity for a :class:`.Config` instance.
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contentful-labs/contentful.py | contentful/cda/client.py | Client.fetch | def fetch(self, resource_class):
"""Construct a :class:`.Request` for the given resource type.
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Examples::
client.fetch(Asset)
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client.fet... | python | def fetch(self, resource_class):
"""Construct a :class:`.Request` for the given resource type.
Provided an :class:`.Entry` subclass, the Content Type ID will be inferred and requested explicitly.
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contentful-labs/contentful.py | contentful/cda/client.py | Client.resolve | def resolve(self, link_resource_type, resource_id, array=None):
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contentful-labs/contentful.py | contentful/cda/client.py | Client.resolve_resource_link | def resolve_resource_link(self, resource_link, array=None):
"""Convenience method for resolving links given a :class:`.resources.ResourceLink` object.
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:param resource_link: (:class:`.ResourceLink`) instance.
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"""Convenience method for resolving links given a :class:`.resources.ResourceLink` object.
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contentful-labs/contentful.py | contentful/cda/client.py | Client.resolve_dict_link | def resolve_dict_link(self, dct, array=None):
"""Convenience method for resolving links given a dict object.
Extract link values and pass to the :func:`.resolve` method of this class.
:param dct: (dict) Dictionary with the link data.
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"""Convenience method for resolving links given a dict object.
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contentful-labs/contentful.py | contentful/cda/client.py | Dispatcher.invoke | def invoke(self, request):
"""Invoke the given :class:`.Request` instance using the associated :class:`.Dispatcher`.
:param request: :class:`.Request` instance to invoke.
:return: :class:`.Resource` subclass.
"""
url = '{0}/{1}'.format(self.base_url, request.remote_path)
... | python | def invoke(self, request):
"""Invoke the given :class:`.Request` instance using the associated :class:`.Dispatcher`.
:param request: :class:`.Request` instance to invoke.
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contentful-labs/contentful.py | contentful/cda/client.py | RequestArray.all | def all(self):
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:return: Result instance as returned by the :class:`.Dispatcher`.
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"""Attempt to retrieve all available resources matching this request.
:return: Result instance as returned by the :class:`.Dispatcher`.
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contentful-labs/contentful.py | contentful/cda/client.py | RequestArray.first | def first(self):
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contentful-labs/contentful.py | contentful/cda/client.py | RequestArray.where | def where(self, params):
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:return: this :class:`.RequestArray` instance for convenience.
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dusktreader/py-buzz | examples/require_condition.py | complex_require_condition | def complex_require_condition():
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"""
print("Demonstrating complex require_condition example")
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"""
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ozgurgunes/django-manifest | manifest/core/templatetags/navigation.py | active_url | def active_url(context, urls, css=None):
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Highlight menu item based on url tag.
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Highlight menu item based on url tag.
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zeroSteiner/smoke-zephyr | smoke_zephyr/configuration.py | MemoryConfiguration.get | def get(self, item_name):
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node ... | python | def get(self, item_name):
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zeroSteiner/smoke-zephyr | smoke_zephyr/configuration.py | MemoryConfiguration.has_option | def has_option(self, option_name):
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zeroSteiner/smoke-zephyr | smoke_zephyr/configuration.py | MemoryConfiguration.has_section | def has_section(self, section_name):
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Checks that an option exists and that it contains sub options.
:param str section_name: The name of the section to check.
:return: True if the section exists.
:rtype: dict
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Sets the value of an option in the configuration.
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:param item_value: The value of the option to set.
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:param str verify_file: The file to load for verification data.
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"""
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file_h.write(self._serializer('dumps', self._storage)) | python | def save(self):
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Save the current configuration to disk.
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | replace_lines | def replace_lines(regexer, handler, lines):
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Finally we replace the original content with the replaced version
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | write_targets | def write_targets(targets, **params):
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wit... | python | def write_targets(targets, **params):
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handler = ReplacementHandler(**params)
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | regexer_for_targets | def regexer_for_targets(targets):
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yield target, regexer | python | def regexer_for_targets(targets):
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | extract_keypairs | def extract_keypairs(lines, regexer):
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | read_targets | def read_targets(targets):
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results.update(extract_keypairs(fh.readlines(), regexer))
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | detect_file_triggers | def detect_file_triggers(trigger_patterns):
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | get_all_triggers | def get_all_triggers(bump, file_triggers):
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | get_lock_behaviour | def get_lock_behaviour(triggers, all_data, lock):
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lock_key = config._forward_aliases.get(Constants.VERSION_LOCK_FIELD)
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | get_final_version_string | def get_final_version_string(release_mode, semver, commit_count=0):
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maybe_dev_version_string = version_string
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | get_dvcs_info | def get_dvcs_info():
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | main | def main(
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set_patch_count=None,
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bump=None,
lock=None,
file_triggers=None,
config_path=None,
**extra_updates
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config_path=None,
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ARMmbed/autoversion | src/auto_version/auto_version_tool.py | main_from_cli | def main_from_cli():
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Load config from cli and file
Detect "bump triggers" - things that cause a version increment
Find the current version
Create a new version
Write out new version and any other requested variables
"""
args, others = get_cli()
if args.version:
... | python | def main_from_cli():
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Detect "bump triggers" - things that cause a version increment
Find the current version
Create a new version
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Clinical-Genomics/trailblazer | trailblazer/cli/core.py | log_cmd | def log_cmd(context, sampleinfo, sacct, quiet, config):
"""Log an analysis.
CONFIG: MIP config file for an analysis
"""
log_analysis = LogAnalysis(context.obj['store'])
try:
new_run = log_analysis(config, sampleinfo=sampleinfo, sacct=sacct)
except MissingFileError as error:
clic... | python | def log_cmd(context, sampleinfo, sacct, quiet, config):
"""Log an analysis.
CONFIG: MIP config file for an analysis
"""
log_analysis = LogAnalysis(context.obj['store'])
try:
new_run = log_analysis(config, sampleinfo=sampleinfo, sacct=sacct)
except MissingFileError as error:
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Clinical-Genomics/trailblazer | trailblazer/cli/core.py | start | def start(context, mip_config, email, priority, dryrun, command, start_with, family):
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mip_config = mip_config or context.obj['mip_config']
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"""Start a new analysis."""
mip_cli = MipCli(context.obj['script'])
mip_config = mip_config or context.obj['mip_config']
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Clinical-Genomics/trailblazer | trailblazer/cli/core.py | init | def init(context, reset, force):
"""Setup the database."""
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message = f"Delete existing tables? [{', '.join(existing_tables)}]"
click.confirm(click.style(message, f... | python | def init(context, reset, force):
"""Setup the database."""
existing_tables = context.obj['store'].engine.table_names()
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message = f"Delete existing tables? [{', '.join(existing_tables)}]"
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Clinical-Genomics/trailblazer | trailblazer/cli/core.py | scan | def scan(context, root_dir):
"""Scan a directory for analyses."""
root_dir = root_dir or context.obj['root']
config_files = Path(root_dir).glob('*/analysis/*_config.yaml')
for config_file in config_files:
LOG.debug("found analysis config: %s", config_file)
with config_file.open() as stre... | python | def scan(context, root_dir):
"""Scan a directory for analyses."""
root_dir = root_dir or context.obj['root']
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Clinical-Genomics/trailblazer | trailblazer/cli/core.py | user | def user(context, name, email):
"""Add a new or display information about an existing user."""
existing_user = context.obj['store'].user(email)
if existing_user:
click.echo(existing_user.to_dict())
elif name:
new_user = context.obj['store'].add_user(name, email)
click.echo(click.... | python | def user(context, name, email):
"""Add a new or display information about an existing user."""
existing_user = context.obj['store'].user(email)
if existing_user:
click.echo(existing_user.to_dict())
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Clinical-Genomics/trailblazer | trailblazer/cli/core.py | cancel | def cancel(context, jobs, analysis_id):
"""Cancel all jobs in a run."""
analysis_obj = context.obj['store'].analysis(analysis_id)
if analysis_obj is None:
click.echo('analysis not found')
context.abort()
elif analysis_obj.status != 'running':
click.echo(f"analysis not running: {a... | python | def cancel(context, jobs, analysis_id):
"""Cancel all jobs in a run."""
analysis_obj = context.obj['store'].analysis(analysis_id)
if analysis_obj is None:
click.echo('analysis not found')
context.abort()
elif analysis_obj.status != 'running':
click.echo(f"analysis not running: {a... | [
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pytroll/posttroll | posttroll/ns.py | get_pub_addresses | def get_pub_addresses(names=None, timeout=10, nameserver="localhost"):
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"""
addrs = []
if names is None:
names = ["", ]
for name in names:
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"""Get the address of the publisher for a given list of publisher *names*
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addrs = []
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pytroll/posttroll | posttroll/ns.py | get_pub_address | def get_pub_address(name, timeout=10, nameserver="localhost"):
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"""
# Socket to talk to server
socket = get_context().socket(REQ)
try:
socket.setsockopt(LINGER, ti... | python | def get_pub_address(name, timeout=10, nameserver="localhost"):
"""Get the address of the publisher for a given publisher *name* from the
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pytroll/posttroll | posttroll/ns.py | get_active_address | def get_active_address(name, arec):
"""Get the addresses of the active modules for a given publisher *name*.
"""
addrs = arec.get(name)
if addrs:
return Message("/oper/ns", "info", addrs)
else:
return Message("/oper/ns", "info", "") | python | def get_active_address(name, arec):
"""Get the addresses of the active modules for a given publisher *name*.
"""
addrs = arec.get(name)
if addrs:
return Message("/oper/ns", "info", addrs)
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pytroll/posttroll | posttroll/ns.py | NameServer.run | def run(self, *args):
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"""Run the listener and answer to requests.
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pytroll/posttroll | posttroll/ns.py | NameServer.stop | def stop(self):
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zeroSteiner/smoke-zephyr | smoke_zephyr/requirements.py | check_requirements | def check_requirements(requirements, ignore=None):
"""
Parse requirements for package information to determine if all requirements
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"""
Parse requirements for package information to determine if all requirements
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andrewda/frc-livescore | livescore/simpleocr_utils/segmentation.py | segments_from_numpy | def segments_from_numpy(segments):
"""reverses segments_to_numpy"""
segments = segments if SEGMENTS_DIRECTION == 0 else segments.tranpose()
segments = [map(int, s) for s in segments]
return segments | python | def segments_from_numpy(segments):
"""reverses segments_to_numpy"""
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segments = numpy.array(segments, dtype=SEGMENT_DATATYPE, ndmin=2) # each segment in a row
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"""given a list of 4-element tuples, transforms it into a numpy array"""
segments = numpy.array(segments, dtype=SEGMENT_DATATYPE, ndmin=2) # each segment in a row
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andrewda/frc-livescore | livescore/simpleocr_utils/segmentation.py | region_from_segment | def region_from_segment(image, segment):
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thespacedoctor/sherlock | sherlock/imports/marshall.py | marshall.ingest | def ingest(self):
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thespacedoctor/sherlock | sherlock/imports/marshall.py | marshall._create_dictionary_of_marshall | def _create_dictionary_of_marshall(
self,
marshallQuery,
marshallTable):
"""create a list of dictionaries containing all the rows in the marshall stream
**Key Arguments:**
- ``marshallQuery`` -- the query used to lift the required data from the marshall d... | python | def _create_dictionary_of_marshall(
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thespacedoctor/sherlock | sherlock/imports/ned_d.py | ned_d.ingest | def ingest(self):
"""Import the ned_d catalogue into the catalogues database
The method first generates a list of python dictionaries from the ned_d datafile, imports this list of dictionaries into a database table and then generates the HTMIDs for that table.
**Usage:**
See clas... | python | def ingest(self):
"""Import the ned_d catalogue into the catalogues database
The method first generates a list of python dictionaries from the ned_d datafile, imports this list of dictionaries into a database table and then generates the HTMIDs for that table.
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thespacedoctor/sherlock | sherlock/imports/ned_d.py | ned_d._create_dictionary_of_ned_d | def _create_dictionary_of_ned_d(
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"""create a list of dictionaries containing all the rows in the ned_d catalogue
**Return:**
- ``dictList`` - a list of dictionaries containing all the rows in the ned_d catalogue
.. todo ::
- update key arguments valu... | python | def _create_dictionary_of_ned_d(
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thespacedoctor/sherlock | sherlock/imports/ned_d.py | ned_d._clean_up_columns | def _clean_up_columns(
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"""clean up columns of the NED table
.. todo ::
- update key arguments values and definitions with defaults
- update return values and definitions
- update usage examples and text
- update docstring text
... | python | def _clean_up_columns(
self):
"""clean up columns of the NED table
.. todo ::
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- update return values and definitions
- update usage examples and text
- update docstring text
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thespacedoctor/sherlock | sherlock/imports/ned_d.py | ned_d._get_metadata_for_galaxies | def _get_metadata_for_galaxies(
self):
"""get metadata for galaxies
.. todo ::
- update key arguments values and definitions with defaults
- update return values and definitions
- update usage examples and text
- update docstring text
... | python | def _get_metadata_for_galaxies(
self):
"""get metadata for galaxies
.. todo ::
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- update docstring text
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thespacedoctor/sherlock | sherlock/imports/ned_d.py | ned_d._get_3000_galaxies_needing_metadata | def _get_3000_galaxies_needing_metadata(
self):
""" get 3000 galaxies needing metadata
**Return:**
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.. todo ::
- update key arguments values and definitions with defaults
- update return ... | python | def _get_3000_galaxies_needing_metadata(
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""" get 3000 galaxies needing metadata
**Return:**
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.. todo ::
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thespacedoctor/sherlock | sherlock/imports/ned_d.py | ned_d._query_ned_and_add_results_to_database | def _query_ned_and_add_results_to_database(
self,
batchCount):
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.. todo ::
- update key arguments values and definitions wit... | python | def _query_ned_and_add_results_to_database(
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""" query ned and add results to database
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thespacedoctor/sherlock | sherlock/imports/ned_d.py | ned_d._update_sdss_coverage | def _update_sdss_coverage(
self):
""" update sdss coverage
.. todo ::
- update key arguments values and definitions with defaults
- update return values and definitions
- update usage examples and text
- update docstring text
- ch... | python | def _update_sdss_coverage(
self):
""" update sdss coverage
.. todo ::
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emichael/PyREM | pyrem/host.py | RemoteHost.run | def run(self, command, **kwargs):
"""Run a command on the remote host.
This is just a wrapper around ``RemoteTask(self.hostname, ...)``
"""
return RemoteTask(self.hostname, command,
identity_file=self._identity_file, **kwargs) | python | def run(self, command, **kwargs):
"""Run a command on the remote host.
This is just a wrapper around ``RemoteTask(self.hostname, ...)``
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emichael/PyREM | pyrem/host.py | RemoteHost._rsync_cmd | def _rsync_cmd(self):
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cmd = ['rsync']
if self._identity_file:
cmd += ['-e', 'ssh -i ' + os.path.expanduser(self._identity_file)]
return cmd | python | def _rsync_cmd(self):
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cmd = ['rsync']
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emichael/PyREM | pyrem/host.py | RemoteHost.send_file | def send_file(self, file_name, remote_destination=None, **kwargs):
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Args:
file_name (str): The relative location of the file on the local
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remote_destination (str): The destination for the file on the remote
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emichael/PyREM | pyrem/host.py | RemoteHost.get_file | def get_file(self, file_name, local_destination=None, **kwargs):
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Clinical-Genomics/trailblazer | trailblazer/mip/config.py | ConfigHandler.make_config | def make_config(self, data: dict):
"""Make a MIP config."""
self.validate_config(data)
config_data = self.prepare_config(data)
return config_data | python | def make_config(self, data: dict):
"""Make a MIP config."""
self.validate_config(data)
config_data = self.prepare_config(data)
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Clinical-Genomics/trailblazer | trailblazer/mip/config.py | ConfigHandler.validate_config | def validate_config(data: dict) -> dict:
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Clinical-Genomics/trailblazer | trailblazer/mip/config.py | ConfigHandler.prepare_config | def prepare_config(data: dict) -> dict:
"""Prepare the config data."""
data_copy = deepcopy(data)
# handle single sample cases with 'unknown' phenotype
if len(data_copy['samples']) == 1:
if data_copy['samples'][0]['phenotype'] == 'unknown':
LOG.info("setting '... | python | def prepare_config(data: dict) -> dict:
"""Prepare the config data."""
data_copy = deepcopy(data)
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Clinical-Genomics/trailblazer | trailblazer/mip/config.py | ConfigHandler.save_config | def save_config(self, data: dict) -> Path:
"""Save a config to the expected location."""
out_dir = Path(self.families_dir) / data['family']
out_dir.mkdir(parents=True, exist_ok=True)
out_path = out_dir / 'pedigree.yaml'
dump = ruamel.yaml.round_trip_dump(data, indent=4, block_seq... | python | def save_config(self, data: dict) -> Path:
"""Save a config to the expected location."""
out_dir = Path(self.families_dir) / data['family']
out_dir.mkdir(parents=True, exist_ok=True)
out_path = out_dir / 'pedigree.yaml'
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andrewda/frc-livescore | livescore/simpleocr_utils/processor.py | _broadcast | def _broadcast(src_processor, src_atr_name, dest_processors, dest_atr_name, transform_function):
"""
To be used exclusively by create_broadcast.
A broadcast function gets an attribute on the src_processor and
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"""
value = getattr(src_pr... | python | def _broadcast(src_processor, src_atr_name, dest_processors, dest_atr_name, transform_function):
"""
To be used exclusively by create_broadcast.
A broadcast function gets an attribute on the src_processor and
sets it (possibly under a different name) on dest_processors
"""
value = getattr(src_pr... | [
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andrewda/frc-livescore | livescore/simpleocr_utils/processor.py | create_broadcast | def create_broadcast(src_atr_name, dest_processors, dest_atr_name=None, transform_function=lambda x: x):
"""
This method creates a function, intended to be called as a
Processor posthook, that copies some of the processor's attributes
to other processors
"""
from functools import partial
if ... | python | def create_broadcast(src_atr_name, dest_processors, dest_atr_name=None, transform_function=lambda x: x):
"""
This method creates a function, intended to be called as a
Processor posthook, that copies some of the processor's attributes
to other processors
"""
from functools import partial
if ... | [
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andrewda/frc-livescore | livescore/simpleocr_utils/processor.py | Processor.get_parameters | def get_parameters(self):
"""returns a dictionary with the processor's stored parameters"""
parameter_names = self.PARAMETERS.keys()
# TODO: Unresolved reference for processor
parameter_values = [getattr(processor, n) for n in parameter_names]
return dict(zip(parameter_names, par... | python | def get_parameters(self):
"""returns a dictionary with the processor's stored parameters"""
parameter_names = self.PARAMETERS.keys()
# TODO: Unresolved reference for processor
parameter_values = [getattr(processor, n) for n in parameter_names]
return dict(zip(parameter_names, par... | [
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andrewda/frc-livescore | livescore/simpleocr_utils/processor.py | Processor.set_parameters | def set_parameters(self, **args):
"""sets the processor stored parameters"""
for k, v in self.PARAMETERS.items():
new_value = args.get(k)
if new_value != None:
if not _same_type(new_value, v):
raise Exception(
"On proces... | python | def set_parameters(self, **args):
"""sets the processor stored parameters"""
for k, v in self.PARAMETERS.items():
new_value = args.get(k)
if new_value != None:
if not _same_type(new_value, v):
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andrewda/frc-livescore | livescore/simpleocr_utils/processor.py | ProcessorStack.get_parameters | def get_parameters(self):
"""gets from all wrapped processors"""
d = {}
for p in self.processors:
parameter_names = list(p.PARAMETERS.keys())
parameter_values = [getattr(p, n) for n in parameter_names]
d.update(dict(zip(parameter_names, parameter_values)))
... | python | def get_parameters(self):
"""gets from all wrapped processors"""
d = {}
for p in self.processors:
parameter_names = list(p.PARAMETERS.keys())
parameter_values = [getattr(p, n) for n in parameter_names]
d.update(dict(zip(parameter_names, parameter_values)))
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