gt stringclasses 1
value | context stringlengths 2.49k 119k |
|---|---|
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | |
"""
@package mi.dataset.parser
@file marine-integrations/mi/dataset/parser/dosta_abcdjm_cspp.py
@author Mark Worden
@brief Parser for the dosta_abcdjm_cspp dataset driver
Release notes:
initial release
"""
import numpy
from mi.core.log import get_logger
from mi.core.common import BaseEnum
from mi.core.instrument.da... | |
#!/usr/bin/python
"""This script BLASTs the preprocessed input agains the Taxonomy databases"""
try:
import optparse, sys, re, csv, traceback
from os import path
import logging.handlers
from libs.python_modules.utils.sysutil import pathDelim
from libs.python_modules.utils.metapathways_utils import fpr... | |
"""GATK variant calling -- HaplotypeCaller and UnifiedGenotyper.
"""
import os
from distutils.version import LooseVersion
import shutil
import subprocess
import toolz as tz
from bcbio import bam, broad, utils
from bcbio.distributed.transaction import file_transaction
from bcbio.pipeline import config_utils
from bcbio... | |
import json
from audio import audio
import logging
import os
from threading import Thread
from time import sleep
from Queue import Queue
import sys
import inspect
import re
INTERVAL = 0.1
EFFECT_LENGTH = 2
logging.basicConfig()
logger = logging.getLogger(__name__)
path = os.path.realpath(__file__)
dir_path = os.pat... | |
# The clearinghouse testlib must be imported first.
from clearinghouse.tests import testlib
from clearinghouse.tests import mocklib
from clearinghouse.common.api import maindb
from clearinghouse.common.exceptions import *
from clearinghouse.common.util import validations
from clearinghouse.website.control import ... | |
# --------------------------------------------------------
# Fully Convolutional Instance-aware Semantic Segmentation
# Copyright (c) 2017 Microsoft
# Licensed under The Apache-2.0 License [see LICENSE for details]
# Modified by Haozhi Qi, Guodong Zhang
# --------------------------------------------------------
"""
Pa... | |
import matplotlib
if matplotlib.get_backend() != 'Qt4Agg':
matplotlib.use('Qt4Agg', warn=True, force=True)
matplotlib.rcParams['toolbar'] = 'None'
import hotspotter.draw_func2 as df2
import hotspotter.helpers as helpers
import matplotlib.pyplot as plt
import numpy as np
import scipy
import matplotlib
import m... | |
# -*- coding: utf-8 -*-
from __future__ import print_function
from collections import OrderedDict
from acq4.util import Qt
from .CanvasItem import CanvasItem
import numpy as np
import scipy.ndimage as ndimage
import pyqtgraph as pg
import pyqtgraph.flowchart
import acq4.util.DataManager as DataManager
import acq4.util.... | |
"""
Example of how to use byte-code execution technique to trace accesses to numpy
arrays.
This file demonstrates two applications of this technique:
* optimize numpy computations for repeated calling
* provide automatic differentiation of procedural code
"""
import __builtin__
import ctypes
import inspect
import lo... | |
'''
If this is running then python is obviously installed, but we need to make sure that python3 is installed.
What we need to do:
0. (optional) Check disk space
0.1: The same env checks in run.py?
1: Make sure this is python 3.5+
1.1: If we installed python 3.5, restart using that
2. Check ... | |
#!/usr/bin/env python3
# Copyright (c) 2017-2019 The Bitcoin Core developers
# Distributed under the MIT software license, see the accompanying
# file COPYING or http://www.opensource.org/licenses/mit-license.php.
"""An example functional test
The module-level docstring should include a high-level description of
what ... | |
#!/usr/bin/env python
'''
Main AVClass class
'''
import sys
import re
import string
import logging
from collections import OrderedDict as OrdDict
from collections import namedtuple
from operator import itemgetter, attrgetter
# Set logging
log = logging.getLogger(__name__)
# Prefix to identify platform tags
platform_... | |
# Copyright (c) 2012 OpenStack Foundation.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless... | |
#!/usr/bin/env python
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "L... | |
# Copyright (c) 2013, Web Notes Technologies Pvt. Ltd. and Contributors
# MIT License. See license.txt
from __future__ import unicode_literals
import frappe, json, sys
from frappe import _
from frappe.utils import cint, flt, now, cstr, strip_html
from frappe.model import default_fields
from frappe.model.naming import ... | |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""This module is for communicating with im.kayac.com.
"""
from __future__ import absolute_import
from __future__ import unicode_literals
from . import exceptions
from . import constants
import future.standard_library
future.standard_library.install_aliases()
import buil... | |
#!/usr/bin/env python
# This script uses the following Unicode tables:
# - UnicodeData.txt
from collections import namedtuple
import csv
import os
import subprocess
NUM_CODEPOINTS=0x110000
def to_ranges(iter):
current = None
for i in iter:
if current is None or i != current[1] or i in (0x10000, 0x2... | |
from abc import ABC, abstractmethod
import cvxpy as cvx
import numpy as np
from cvxpy import SolverError
class Relevance_CVXProblem(ABC):
def __repr__(self) -> str:
if self.isLowerBound:
lower = "Lower"
else:
lower = "Upper"
name = f"{lower}_{self.current_feature}_... | |
#!/usr/bin/env python
'''
ooiservices/app/main/data.py
Support for generating sample data
'''
__author__ = 'Andy Bird'
from flask import jsonify, request, current_app, url_for, Flask, make_response
from ooiservices.app.uframe import uframe as api
import numpy as np
import calendar
import time
from dateutil.parser i... | |
# ----------------------------------------------------------------------------
# Copyright 2015 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.o... | |
# -*- coding: utf-8 -*-
from __future__ import print_function
import os
import glob
import json
import weakref
from collections import OrderedDict
import numpy as np
import scipy
import scipy.stats
from six import iteritems
import pyqtgraph as pg
from acq4.modules.Module import Module
from acq4.analysis.AnalysisModu... | |
import uuid
from cassandra import ConsistencyLevel, WriteFailure, WriteTimeout
from distutils.version import LooseVersion
from dtest import Tester
from thrift_bindings.v22 import ttypes as thrift_types
from thrift_tests import get_thrift_client
from tools.decorators import since
KEYSPACE = "foo"
# These tests use ... | |
import random
import re
import sys
import time
from reusables.string_manipulation import int_to_words
from app.common_functions import formatted_items, comma_separated, parse_inventory_action, odds, remove_little_words, \
are_is, find_specifics, the_name
from app.main_classes import MapSquare, Player
from app.bat... | |
# Copyright 2021 Google LLC
#
# Use of this source code is governed by a BSD-style
# license that can be found in the LICENSE file or at
# https://developers.google.com/open-source/licenses/bsd
from .models import Author
from django.db import NotSupportedError
from django.db.models import Index
from django.db.models.... | |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | |
# urllib3/connection.py
# Copyright 2008-2013 Andrey Petrov and contributors (see CONTRIBUTORS.txt)
#
# This module is part of urllib3 and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
import sys
import socket
from socket import timeout as SocketTimeout
try: # Python 3
fr... | |
"""Provides device automations for Cover."""
from typing import Any, Dict, List
import voluptuous as vol
from homeassistant.const import (
ATTR_ENTITY_ID,
ATTR_SUPPORTED_FEATURES,
CONF_ABOVE,
CONF_BELOW,
CONF_CONDITION,
CONF_DEVICE_ID,
CONF_DOMAIN,
CONF_ENTITY_ID,
CONF_TYPE,
ST... | |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# (c) 2018, Simon Dodsley (simon@purestorage.com)
# GNU General Public License v3.0+ (see COPYING or
# https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1... | |
import django
import logging
import yaml
import os
import datetime
import re
from itertools import chain
from django.core.exceptions import ValidationError
from django.db import models
from django.apps import apps
from django.conf import settings
from djangae import environment
from djangae.db.utils import get_top_co... | |
# -*- coding: utf-8 -*-
"""
Created on Sun Nov 12 16:50:15 2017
@author: Damien
"""
import random
import math
import numpy as np
from deap import base
from deap import creator
from deap import tools
import recognizer as rc
import template_patterns as tp
import matplotlib.pyplot as plt
POPULATION_SIZE = 50
MAX_GENE... | |
# Copyright (c) 2006-2013 Regents of the University of Minnesota.
# For licensing terms, see the file LICENSE.
import copy
import os
import sys
import conf
import g
from grax.access_level import Access_Level
from grax.user import User
from gwis.query_filters import Query_Filters
from gwis.query_viewport import Query... | |
from contextlib import ContextDecorator, contextmanager
from django.db import (
DEFAULT_DB_ALIAS, DatabaseError, Error, ProgrammingError, connections,
)
class TransactionManagementError(ProgrammingError):
"""Transaction management is used improperly."""
pass
def get_connection(using=None):
"""
... | |
#!/usr/bin/env python
# encoding: utf-8
# opc.py
#
# Command-line interface for operations on one or more Open Packaging
# Convention (OPC) files, such as .docx, .pptx, and .xlsx files.
import argparse
import os
import sys
from opcdiag.controller import OpcController
class CommandController(object):
"""
O... | |
import Live
from _Generic.Devices import *
from ableton.v2.control_surface.component import Component as ControlSurfaceComponent
from ableton.v2.control_surface.elements import EncoderElement, ButtonElement, DisplayDataSource
class Live8DeviceComponent(ControlSurfaceComponent):
__doc__ = ' Class representing a de... | |
# -*- coding: utf-8 -*-
from copy import copy
from classytags.utils import flatten_context
from django.template import Template, Context
from django.template.loader import render_to_string
from django.utils import six
from django.utils.safestring import mark_safe
from cms.cache.placeholder import get_placeholder_cach... | |
"""
pynipap - a Python NIPAP client library
=======================================
pynipap is a Python client library for the NIPAP IP address planning
system. It is structured as a simple ORM.
To make it easy to maintain it's quite "thin", passing many arguments
straight through to the backen... | |
import uuid
from django.conf import settings
from django.db.backends.base.operations import BaseDatabaseOperations
from django.utils import timezone
from django.utils.encoding import force_text
class DatabaseOperations(BaseDatabaseOperations):
compiler_module = "django.db.backends.mysql.compiler"
# MySQL st... | |
#!/usr/bin/env python
# coding=utf-8
# Author: YAO Matrix (yaoweifeng0301@126.com)
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import gzip
import os
import sys
import time
import datetime
import logging
import numpy as np
from six.moves import urllib
... | |
import pydotplus
import os
import math
import numpy as np
from collections import OrderedDict
from itertools import islice
from . import util, diagnostics
from .distributions import Empirical
class Node():
def __init__(self, address_id, variable, weight):
self.address_id = address_id
self.variabl... | |
import time as timer
import cvxopt as co
import numpy as np
import pylab as pl
import sklearn.metrics as metric
import matplotlib.pyplot as plt
import scipy.io as io
from kernel import Kernel
from ocsvm import OCSVM
from latent_ocsvm import LatentOCSVM
from toydata import ToyData
from so_hmm import SOHMM
def get_mo... | |
# encoding: utf-8
"""
Tests basic things that generator3 consists of.
NOTE: does not work in Jython 2.2 or IronPython 1.x, because pyparsing does not.
"""
import unittest
from generator3 import *
M = ModuleRedeclarator
import sys
IS_CLI = sys.platform == 'cli'
VERSION = sys.version_info[:2] # only (major, minor)
c... | |
import datetime
import json
from psycopg2.extras import DateRange, DateTimeTZRange, NumericRange, Range
from django.contrib.postgres import forms, lookups
from django.db import models
from django.db.models.lookups import PostgresOperatorLookup
from .utils import AttributeSetter
__all__ = [
'RangeField', 'Intege... | |
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | |
from __future__ import division, print_function, absolute_import
import warnings
import numpy as np
from numpy import array
from numpy.testing import (assert_array_almost_equal, assert_array_equal,
run_module_suite, assert_raises, assert_allclose,
assert_equal, ass... | |
from handlers.base import BaseHandler
from tornado import gen
import momoko
import tornado.web
import logging
logger = logging.getLogger('kisspy.' + __name__)
MAX_ADMIN_UID=2
from models import A,B,C,User, Link, Visit, Config
from settings import MEDIA_ROOT
import os
import time
import forms
class BaseAdminMixin(o... | |
from django.db import connection
from django.db.migrations.executor import MigrationExecutor
from django.test import modify_settings, override_settings
from .test_base import MigrationTestBase
@modify_settings(INSTALLED_APPS={'append': 'migrations2'})
class ExecutorTests(MigrationTestBase):
"""
Tests the mig... | |
# ===============================================================================
# Copyright 2016 ross
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | |
# This file is part of MANTIS OS, Operating System
# See http://mantis.cs.colorado.edu/
#
# Copyright (C) 2003-2005 University of Colorado, Boulder
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the mos license (see file LICENSE)
import wx, thread
import net_model
cla... | |
#!/usr/bin/env python
# This code will check the folder and some subfolder assigned by the user to see if the mp-*** listed in a text file are available or not
# If available, the selected property at selected concentration and temperature will be reported
# If not, N.A would be typed in front of the list
# By: Alireza... | |
#!/usr/bin/env python
"""
A language-agnostic configuration parser.
Currently supports YAML, JSON, INI and TOML serialization formats.
"""
import collections
import contextlib
import functools
import inspect
import json
import logging
import multiprocessing
import os
import re
import sys
import threading
import warni... | |
# Copyright (c) 2014-present PlatformIO <contact@platformio.org>
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | |
# Copyright 2014 Open Source Robotics Foundation, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... | |
#!/usr/bin/env python
import roslib
import rospy
import smach
import smach_ros
import actionlib
import time
import threading
from smach_ros import SimpleActionState
from std_msgs.msg import String
from std_msgs.msg import Float32MultiArray
RECOGNIZER_CALLBACK = None
RECOGNIZER_CALLBACK2 = None
def handleRecognizerMe... | |
from __future__ import print_function
import codecs
import os
import fileinput
import sys
# Import XML parser
import xml.etree.ElementTree as ET
# Import Postgres connector
import psycopg2 as pgsql
# Portability
try:
register_namespace = ET.register_namespace
except AttributeError:
def register_namespace(prefi... | |
#
#
# Copyright (C) 2011, 2012 Google Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# 1. Redistributions of source code must retain the above copyright notice,
# this list of condition... | |
"""Tests for the Input slider component."""
# pylint: disable=protected-access
import datetime
import pytest
import voluptuous as vol
from homeassistant.components.input_datetime import (
ATTR_DATE,
ATTR_DATETIME,
ATTR_EDITABLE,
ATTR_TIME,
ATTR_TIMESTAMP,
CONF_HAS_DATE,
CONF_HAS_TIME,
... | |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Copyright (C) 2008-2017, Luis Pedro Coelho <luis@luispedro.org>
# vim: set ts=4 sts=4 sw=4 expandtab smartindent:
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
... | |
import functools
import numpy as np
import pytest
import tensorflow as tf
from mock import mock
from tests.helper import assert_variables
from tests.layers.convolutional.helper import *
from tests.layers.core.test_gated import safe_sigmoid
from tests.layers.helper import l2_normalize
from tfsnippet.layers import *
fr... | |
# coding: utf-8
from __future__ import absolute_import
import six
from unittest import expectedFailure
from django.test import TransactionTestCase
from celery_rpc.exceptions import remote_exception_registry
from celery_rpc.tests import factories
from ..client import Pipe, Client
from .utils import SimpleModelTestMixi... | |
import re
import Qualysv2
import pytest
import requests
from Qualysv2 import is_empty_result, format_and_validate_response, \
parse_two_keys_dict, create_ip_list_dicts, build_args_dict, handle_general_result, \
change_dict_keys, COMMANDS_ARGS_DATA, limit_ip_results, Client, build_host_list_detection_outputs, \... | |
"""
Install a Custom Terraform Version for CloudBolt
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Install a user-specified version of Terraform on CloudBolt.
This can be set as the Global Default in Admin Miscellaneous Settings.
Version Requirements
~~~~~~~~~~~~~~~~~~~~
CloudBolt 9.0
"""
import requests
import ... | |
import sys
sys.path.append('.')
import lxmls.sequences.crf_online as crfo
import lxmls.sequences.structured_perceptron as spc
import lxmls.readers.pos_corpus as pcc
import lxmls.sequences.id_feature as idfc
import lxmls.sequences.extended_feature as exfc
print "CRF Exercise"
corpus = pcc.PostagCorpus()
train_seq = c... | |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# Copyright (C) 2017-2020 The Project X-Ray Authors.
#
# Use of this source code is governed by a ISC-style
# license that can be found in the LICENSE file or at
# https://opensource.org/licenses/ISC
#
# SPDX-License-Identifier: ISC
"""
This script allows to find missin... | |
import django
import warnings
from django.conf import settings
from django.core.exceptions import FieldError
from django.db import models
from django.db.models.constants import LOOKUP_SEP
from django.db.models.expressions import Expression
from django.db.models.fields import FieldDoesNotExist
from django.db.models.fie... | |
# vim: tabstop=4 shiftwidth=4 softtabstop=4
# Copyright (c) 2012 Intel Corporation.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apa... | |
# Copyright 2012 OpenStack Foundation
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | |
#!/usr/bin/env python
#
# Copyright 2009 Facebook
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | |
"""Handles the instrospection of REST Framework Views and ViewSets."""
from abc import ABCMeta, abstractmethod
import re
from django.contrib.admindocs.utils import trim_docstring
from rest_framework.views import get_view_name, get_view_description
def get_resolved_value(obj, attr, default=None):
value = getattr... | |
import logging
from six import add_metaclass
from abc import ABCMeta, abstractmethod
from agentml.parser import Element
from agentml.common import attribute
from agentml.parser.trigger.response import Response
@add_metaclass(ABCMeta)
class BaseCondition(object):
"""
AgentML Base Condition class
"""
de... | |
# -*- coding: utf-8 -*-
# batteries included
import os
from copy import deepcopy
# thirdparty
import requests
import xmltodict
# this package
from utils import normalize_url
from exceptions import ConfigFetchError, InvalidAPICallError, InvalidCredentialsError, UnknownArtifactoryRestError
ART_REPO_TYPES = ["ALL", "LO... | |
# coding=utf-8
import math
import hashlib
import base64
from tornado import web
from tornado.web import authenticated
from vanellope.handlers import BaseHandler
from vanellope import config
from vanellope.handlers import Days
class WelcomePage(BaseHandler):
def get(self):
admin = self.user.get_admin_use... | |
# -*- coding: utf-8 -*-
from datetime import date
from pathlib import Path
from allauth.account.models import EmailAddress
from django import forms
from django.contrib import messages
from djspace.core.models import DISABILITY_CHOICES
from djspace.core.models import EMPLOYMENT_CHOICES
from djspace.core.models import ... | |
import numpy as np
import sys
import sklearn.tree
import Context, Argmax, Metrics
from Policy import *
import string
import ContextIterators
import Metrics
class BanditSim(object):
def __init__(self, X, N, K, eps, one_pass=False, reward_noise=0.0):
"""
Simulate a K-armed contextual bandit game with... | |
import datetime
import re
from flask import abort
from flask import current_app as app
from flask import redirect, request, session, url_for
from CTFd.cache import cache
from CTFd.constants.teams import TeamAttrs
from CTFd.constants.users import UserAttrs
from CTFd.models import Fails, Teams, Tracking, Users, db
from... | |
import numpy as np
import openmc
import pytest
def assert_infinite_bb(s):
ll, ur = (-s).bounding_box
assert np.all(np.isinf(ll))
assert np.all(np.isinf(ur))
ll, ur = (+s).bounding_box
assert np.all(np.isinf(ll))
assert np.all(np.isinf(ur))
def test_plane():
s = openmc.Plane(A=1, B=2, C=-... | |
# Copyright 2015 Pants project contributors (see CONTRIBUTORS.md).
# Licensed under the Apache License, Version 2.0 (see LICENSE).
import re
from dataclasses import dataclass
from typing import Any, Dict, Iterable, Optional, Tuple, Union, cast
from pants.base.exceptions import DuplicateNameError, MappingError, Unaddr... | |
#!/usr/bin/env python
"""
@package mi.dataset.parser.test
@file marine-integrations/mi/dataset/parser/test/test_dosta_ln_wfp_sio.py
@author Christopher Fortin
@brief Test code for a dosta_ln_wfp_sio data parser
"""
import os
import struct
import ntplib
from nose.plugins.attrib import attr
from mi.core.exceptions im... | |
# coding: utf-8
from __future__ import division, unicode_literals, print_function
"""
This module implements plotter for DOS and band structure.
"""
__author__ = "Shyue Ping Ong, Geoffroy Hautier"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Shyue Ping Ong"
__email__ ... | |
#!/usr/bin/env python
"""
Calculate the angular distribution function (ADF) from files.
Take an average over atoms in a file or files.
Usage:
adf.py [options] INFILE [INFILE...]
Options:
-h, --help Show this help message and exit.
-w DEG Width of the angular degree. [default: 1.0]
-r RCUT Cutoff rad... | |
# This file helps to compute a version number in source trees obtained from
# git-archive tarball (such as those provided by githubs download-from-tag
# feature). Distribution tarballs (built by setup.py sdist) and build
# directories (produced by setup.py build) will contain a much shorter file
# that just contains t... | |
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not... | |
# -- coding: utf-8 --
from __future__ import absolute_import
from bs4 import BeautifulSoup
from urlparse import urlparse, urljoin
from re import search
from chime import repo_functions
class ChimeTestClient:
''' Stateful client for Chime Flask test client.
'''
def __init__(self, client, test):
'''... | |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# This file is subject to the terms and conditions defined in
# file 'LICENSE.md', which is part of this source code package.
#
import time
from kubernetes_py import K8sConfig
from kubernetes_py.K8sContainer import K8sContainer
from kubernetes_py.K8sExceptions import N... | |
# Copyright (c) 2009-2012, Geoffrey Biggs
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of condit... | |
# Copyright (c) 2013, Web Notes Technologies Pvt. Ltd. and Contributors
# MIT License. See license.txt
from __future__ import unicode_literals
import frappe
import unittest, json
import importlib
from frappe.modules import load_doctype_module, get_module_name
from frappe.utils import cstr
def main(app=None, module=... | |
import base64
import importlib
import json
import random
import re
import string
import unicodedata
from collections import OrderedDict
from django.contrib.auth import get_user_model
from django.contrib.sites.models import Site
from django.core.exceptions import ImproperlyConfigured
from django.core.serializers.json i... | |
# coding=utf-8
# Copyright 2015 Pants project contributors (see CONTRIBUTORS.md).
# Licensed under the Apache License, Version 2.0 (see LICENSE).
from __future__ import absolute_import, division, print_function, unicode_literals
import inspect
import re
import textwrap
from builtins import object, range
from collecti... | |
#!/usr/bin/python2.4
# encoding: utf-8
"""
scop.py
Functions for interacting with the SCOPe database.
Created by Shane O'Connor 2015.
"""
import sys, os
import pprint
import traceback
if __name__ == "__main__":
sys.path.insert(0, "../../")
from klab.db.mysql import DatabaseInterface
from klab import colortext
fr... | |
#!/usr/bin/env python
# create a color map based on an image.
# vaguely octree-inspired
import sys
sys.path.append("..")
from fract4d import gradient
from PIL import ImageFile
import gtk
class Node:
def __init__(self,r,g,b,count):
self.branches = [None] * 8
self.r = r
self.g = g
... | |
"""
This module contains the 'base' GEOSGeometry object -- all GEOS Geometries
inherit from this object.
"""
# Python, ctypes and types dependencies.
import re
from ctypes import addressof, byref, c_double, c_size_t
# super-class for mutable list behavior
from django.contrib.gis.geos.mutable_list import ListMixin
#... | |
import csv
import pickle
import requests
import os
import re
from elasticsearch import Elasticsearch
class MOD():
INDEX_NAME = 'searchable_items_blue'
DOC_TYPE = 'searchable_item'
go_blacklist = ("GO:0008150", "GO:0003674", "GO:0005575")
gene_bkp_filename = "genes_bkp.pickle"
go_bkp_filename = "... | |
import json
import pytest
from werkzeug.exceptions import NotFound
from arrested import (
Endpoint, GetListMixin, GetObjectMixin,
ResponseHandler, RequestHandler, ObjectMixin
)
from mock import patch
from tests.endpoints import CharactersEndpoint, CharacterEndpoint
GET = pytest.mark.GET
POST = pytest.mark.... | |
# -*-*- encoding: utf-8 -*-*-
#
# gateway4labs is free software: you can redistribute it and/or modify
# it under the terms of the BSD 2-Clause License
# gateway4labs is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PA... | |
import collections
try: # pragma: no cover
import unittest2 as unittest
except ImportError: # pragma: no cover
import unittest
try: # pragma: no cover
from unittest import mock
except ImportError: # pragma: no cover
import mock
import irc.client
import nirc.core
import nirc.errors
def _privmsg... | |
# coding=utf-8
import logging
from django.conf import settings
from django.conf.urls import url, include
from django.core.exceptions import PermissionDenied
from django.http import HttpResponse, Http404
from django.utils.functional import cached_property
from django.views.decorators.csrf import csrf_exempt
import sys
f... | |
"""
Functions for interacting with single game pgn files.
"""
import os
import time
from os.path import isfile, join
import random as rnd
import numpy as np
import chess.pgn
from pkg_resources import resource_filename
import guerilla.data_handler as dh
def read_pgn(filename, max_skip=80):
"""
Given a pgn f... | |
#from __future__ import print_function
from __future__ import division
import matplotlib.pyplot as plt
import numpy as np
import random
import math
import itertools
import pylab
from scipy import spatial
from matplotlib.path import Path
# user defined options
disk = False # this parameter defines if we ... | |
from graphql.core.language.parser import parse
from graphql.core.type import GraphQLObjectType, GraphQLField, GraphQLString, GraphQLNonNull, GraphQLSchema
from graphql.core.execution import execute
sync_error = Exception('sync')
non_null_sync_error = Exception('nonNullSync')
class ThrowingData(object):
def sync(... | |
# Copyright 2012 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ... |
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