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OSSOS/MOP | src/ossos/core/ossos/storage.py | reset_datasec | def reset_datasec(cutout, datasec, naxis1, naxis2):
"""
reset the datasec to account for a possible cutout.
@param cutout:
@param datasec:
@param naxis1: size of the original image in the 'x' direction
@param naxis2: size of the oringal image in the 'y' direction
@return:
"""
if cu... | python | def reset_datasec(cutout, datasec, naxis1, naxis2):
"""
reset the datasec to account for a possible cutout.
@param cutout:
@param datasec:
@param naxis1: size of the original image in the 'x' direction
@param naxis2: size of the oringal image in the 'y' direction
@return:
"""
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OSSOS/MOP | src/ossos/core/ossos/storage.py | get_hdu | def get_hdu(uri, cutout=None):
"""Get a at the given uri from VOSpace, possibly doing a cutout.
If the cutout is flips the image then we also must flip the datasec keywords. Also, we must offset the
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"""Get a at the given uri from VOSpace, possibly doing a cutout.
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OSSOS/MOP | src/ossos/core/ossos/storage.py | get_fwhm_tag | def get_fwhm_tag(expnum, ccd, prefix=None, version='p'):
"""
Get the FWHM from the VOSpace annotation.
@param expnum:
@param ccd:
@param prefix:
@param version:
@return:
"""
uri = get_uri(expnum, ccd, version, ext='fwhm', prefix=prefix)
if uri not in fwhm:
key = "fwhm_{:... | python | def get_fwhm_tag(expnum, ccd, prefix=None, version='p'):
"""
Get the FWHM from the VOSpace annotation.
@param expnum:
@param ccd:
@param prefix:
@param version:
@return:
"""
uri = get_uri(expnum, ccd, version, ext='fwhm', prefix=prefix)
if uri not in fwhm:
key = "fwhm_{:... | [
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OSSOS/MOP | src/ossos/core/ossos/storage.py | get_fwhm | def get_fwhm(expnum, ccd, prefix=None, version='p'):
"""Get the FWHM computed for the given expnum/ccd combo.
@param expnum:
@param ccd:
@param prefix:
@param version:
@return:
"""
uri = get_uri(expnum, ccd, version, ext='fwhm', prefix=prefix)
filename = os.path.basename(uri)
... | python | def get_fwhm(expnum, ccd, prefix=None, version='p'):
"""Get the FWHM computed for the given expnum/ccd combo.
@param expnum:
@param ccd:
@param prefix:
@param version:
@return:
"""
uri = get_uri(expnum, ccd, version, ext='fwhm', prefix=prefix)
filename = os.path.basename(uri)
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OSSOS/MOP | src/ossos/core/ossos/storage.py | _get_zeropoint | def _get_zeropoint(expnum, ccd, prefix=None, version='p'):
"""
Retrieve the zeropoint stored in the tags associated with this image.
@param expnum: Exposure number
@param ccd: ccd of the exposure
@param prefix: possible prefix (such as 'fk')
@param version: which version: p, s, or o ?
@retur... | python | def _get_zeropoint(expnum, ccd, prefix=None, version='p'):
"""
Retrieve the zeropoint stored in the tags associated with this image.
@param expnum: Exposure number
@param ccd: ccd of the exposure
@param prefix: possible prefix (such as 'fk')
@param version: which version: p, s, or o ?
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OSSOS/MOP | src/ossos/core/ossos/storage.py | get_zeropoint | def get_zeropoint(expnum, ccd, prefix=None, version='p'):
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This command expects that there is a file called #######p##.zeropoint.used which contains the zeropoint.
@param expnum: exposure to get zeropoint ... | python | def get_zeropoint(expnum, ccd, prefix=None, version='p'):
"""Get the zeropoint for this exposure using the zeropoint.used file created during source planting..
This command expects that there is a file called #######p##.zeropoint.used which contains the zeropoint.
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OSSOS/MOP | src/ossos/core/ossos/storage.py | mkdir | def mkdir(dirname):
"""make directory tree in vospace.
@param dirname: name of the directory to make
"""
dir_list = []
while not client.isdir(dirname):
dir_list.append(dirname)
dirname = os.path.dirname(dirname)
while len(dir_list) > 0:
logging.info("Creating directory:... | python | def mkdir(dirname):
"""make directory tree in vospace.
@param dirname: name of the directory to make
"""
dir_list = []
while not client.isdir(dirname):
dir_list.append(dirname)
dirname = os.path.dirname(dirname)
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OSSOS/MOP | src/ossos/core/ossos/storage.py | vofile | def vofile(filename, **kwargs):
"""
Open and return a handle on a VOSpace data connection
@param filename:
@param kwargs:
@return:
"""
basename = os.path.basename(filename)
if os.access(basename, os.R_OK):
return open(basename, 'r')
kwargs['view'] = kwargs.get('view', 'data')... | python | def vofile(filename, **kwargs):
"""
Open and return a handle on a VOSpace data connection
@param filename:
@param kwargs:
@return:
"""
basename = os.path.basename(filename)
if os.access(basename, os.R_OK):
return open(basename, 'r')
kwargs['view'] = kwargs.get('view', 'data')... | [
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OSSOS/MOP | src/ossos/core/ossos/storage.py | open_vos_or_local | def open_vos_or_local(path, mode="rb"):
"""
Opens a file which can either be in VOSpace or the local filesystem.
@param path:
@param mode:
@return:
"""
filename = os.path.basename(path)
if os.access(filename, os.F_OK):
return open(filename, mode)
if path.startswith("vos:"):
... | python | def open_vos_or_local(path, mode="rb"):
"""
Opens a file which can either be in VOSpace or the local filesystem.
@param path:
@param mode:
@return:
"""
filename = os.path.basename(path)
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OSSOS/MOP | src/ossos/core/ossos/storage.py | copy | def copy(source, dest):
"""
use the vospace service to get a file.
@param source:
@param dest:
@return:
"""
logger.info("copying {} -> {}".format(source, dest))
return client.copy(source, dest) | python | def copy(source, dest):
"""
use the vospace service to get a file.
@param source:
@param dest:
@return:
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logger.info("copying {} -> {}".format(source, dest))
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OSSOS/MOP | src/ossos/core/ossos/storage.py | vlink | def vlink(s_expnum, s_ccd, s_version, s_ext,
l_expnum, l_ccd, l_version, l_ext, s_prefix=None, l_prefix=None):
"""make a link between two version of a file.
@param s_expnum:
@param s_ccd:
@param s_version:
@param s_ext:
@param l_expnum:
@param l_ccd:
@param l_version:
@par... | python | def vlink(s_expnum, s_ccd, s_version, s_ext,
l_expnum, l_ccd, l_version, l_ext, s_prefix=None, l_prefix=None):
"""make a link between two version of a file.
@param s_expnum:
@param s_ccd:
@param s_version:
@param s_ext:
@param l_expnum:
@param l_ccd:
@param l_version:
@par... | [
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OSSOS/MOP | src/ossos/core/ossos/storage.py | delete | def delete(expnum, ccd, version, ext, prefix=None):
"""
delete a file, no error on does not exist
@param expnum:
@param ccd:
@param version:
@param ext:
@param prefix:
@return:
"""
uri = get_uri(expnum, ccd=ccd, version=version, ext=ext, prefix=prefix)
remove(uri) | python | def delete(expnum, ccd, version, ext, prefix=None):
"""
delete a file, no error on does not exist
@param expnum:
@param ccd:
@param version:
@param ext:
@param prefix:
@return:
"""
uri = get_uri(expnum, ccd=ccd, version=version, ext=ext, prefix=prefix)
remove(uri) | [
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OSSOS/MOP | src/ossos/core/ossos/storage.py | my_glob | def my_glob(pattern):
"""
get a listing matching pattern
@param pattern:
@return:
"""
result = []
if pattern[0:4] == 'vos:':
dirname = os.path.dirname(pattern)
flist = listdir(dirname)
for fname in flist:
fname = '/'.join([dirname, fname])
if ... | python | def my_glob(pattern):
"""
get a listing matching pattern
@param pattern:
@return:
"""
result = []
if pattern[0:4] == 'vos:':
dirname = os.path.dirname(pattern)
flist = listdir(dirname)
for fname in flist:
fname = '/'.join([dirname, fname])
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OSSOS/MOP | src/ossos/core/ossos/storage.py | has_property | def has_property(node_uri, property_name, ossos_base=True):
"""
Checks if a node in VOSpace has the specified property.
@param node_uri:
@param property_name:
@param ossos_base:
@return:
"""
if get_property(node_uri, property_name, ossos_base) is None:
return False
else:
... | python | def has_property(node_uri, property_name, ossos_base=True):
"""
Checks if a node in VOSpace has the specified property.
@param node_uri:
@param property_name:
@param ossos_base:
@return:
"""
if get_property(node_uri, property_name, ossos_base) is None:
return False
else:
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OSSOS/MOP | src/ossos/core/ossos/storage.py | get_property | def get_property(node_uri, property_name, ossos_base=True):
"""
Retrieves the value associated with a property on a node in VOSpace.
@param node_uri:
@param property_name:
@param ossos_base:
@return:
"""
# Must use force or we could have a cached copy of the node from before
# prope... | python | def get_property(node_uri, property_name, ossos_base=True):
"""
Retrieves the value associated with a property on a node in VOSpace.
@param node_uri:
@param property_name:
@param ossos_base:
@return:
"""
# Must use force or we could have a cached copy of the node from before
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OSSOS/MOP | src/ossos/core/ossos/storage.py | set_property | def set_property(node_uri, property_name, property_value, ossos_base=True):
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@param node_uri:
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... | python | def set_property(node_uri, property_name, property_value, ossos_base=True):
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Sets the value of a property on a node in VOSpace. If the property
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OSSOS/MOP | src/ossos/core/ossos/storage.py | build_counter_tag | def build_counter_tag(epoch_field, dry_run=False):
"""
Builds the tag for the counter of a given epoch/field, without the OSSOS base.
@param epoch_field:
@param dry_run:
@return:
"""
logger.info("Epoch Field: {}, OBJECT_COUNT {}".format(str(epoch_field), str(OBJECT_COUNT)))
tag = epoch_... | python | def build_counter_tag(epoch_field, dry_run=False):
"""
Builds the tag for the counter of a given epoch/field, without the OSSOS base.
@param epoch_field:
@param dry_run:
@return:
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OSSOS/MOP | src/ossos/core/ossos/storage.py | read_object_counter | def read_object_counter(node_uri, epoch_field, dry_run=False):
"""
Reads the object counter for the given epoch/field on the specified node.
@param node_uri:
@param epoch_field:
@param dry_run:
@return: the current object count.
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"""
Reads the object counter for the given epoch/field on the specified node.
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@param epoch_field:
@param dry_run:
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OSSOS/MOP | src/ossos/core/ossos/storage.py | increment_object_counter | def increment_object_counter(node_uri, epoch_field, dry_run=False):
"""
Increment the object counter used to create unique object identifiers.
@param node_uri:
@param epoch_field:
@param dry_run:
@return: The object count AFTER incrementing.
"""
current_count = read_object_counter(node... | python | def increment_object_counter(node_uri, epoch_field, dry_run=False):
"""
Increment the object counter used to create unique object identifiers.
@param node_uri:
@param epoch_field:
@param dry_run:
@return: The object count AFTER incrementing.
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OSSOS/MOP | src/ossos/core/ossos/storage.py | get_mopheader | def get_mopheader(expnum, ccd, version='p', prefix=None):
"""
Retrieve the mopheader, either from cache or from vospace
@param expnum:
@param ccd:
@param version:
@param prefix:
@return: Header
"""
prefix = prefix is None and "" or prefix
mopheader_uri = dbimages_uri(expnum=expn... | python | def get_mopheader(expnum, ccd, version='p', prefix=None):
"""
Retrieve the mopheader, either from cache or from vospace
@param expnum:
@param ccd:
@param version:
@param prefix:
@return: Header
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prefix = prefix is None and "" or prefix
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OSSOS/MOP | src/ossos/core/ossos/storage.py | _get_sghead | def _get_sghead(expnum):
"""
Use the data web service to retrieve the stephen's astrometric header.
:param expnum: CFHT exposure number you want the header for
:rtype : list of astropy.io.fits.Header objects.
"""
version = 'p'
key = "{}{}".format(expnum, version)
if key in sgheaders:
... | python | def _get_sghead(expnum):
"""
Use the data web service to retrieve the stephen's astrometric header.
:param expnum: CFHT exposure number you want the header for
:rtype : list of astropy.io.fits.Header objects.
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version = 'p'
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OSSOS/MOP | src/ossos/core/ossos/storage.py | get_header | def get_header(uri):
"""
Pull a FITS header from observation at the given URI
@param uri: The URI of the image in VOSpace.
"""
if uri not in astheaders:
astheaders[uri] = get_hdu(uri, cutout="[1:1,1:1]")[0].header
return astheaders[uri] | python | def get_header(uri):
"""
Pull a FITS header from observation at the given URI
@param uri: The URI of the image in VOSpace.
"""
if uri not in astheaders:
astheaders[uri] = get_hdu(uri, cutout="[1:1,1:1]")[0].header
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OSSOS/MOP | src/ossos/core/ossos/storage.py | get_astheader | def get_astheader(expnum, ccd, version='p', prefix=None):
"""
Retrieve the header for a given dbimages file.
@param expnum: CFHT odometer number
@param ccd: which ccd based extension (0..35)
@param version: 'o','p', or 's'
@param prefix:
@return:
"""
logger.debug("Getting ast heade... | python | def get_astheader(expnum, ccd, version='p', prefix=None):
"""
Retrieve the header for a given dbimages file.
@param expnum: CFHT odometer number
@param ccd: which ccd based extension (0..35)
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OSSOS/MOP | src/ossos/core/ossos/storage.py | Task.tag | def tag(self):
"""
Get the string representation of the tag used to annotate the status in VOSpace.
@return: str
"""
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Get the string representation of the tag used to annotate the status in VOSpace.
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OSSOS/MOP | src/ossos/core/scripts/scramble.py | scramble | def scramble(expnums, ccd, version='p', dry_run=False):
"""run the plant script on this combination of exposures"""
mjds = []
fobjs = []
for expnum in expnums:
filename = storage.get_image(expnum, ccd=ccd, version=version)
fobjs.append(fits.open(filename))
# Pull out values to r... | python | def scramble(expnums, ccd, version='p', dry_run=False):
"""run the plant script on this combination of exposures"""
mjds = []
fobjs = []
for expnum in expnums:
filename = storage.get_image(expnum, ccd=ccd, version=version)
fobjs.append(fits.open(filename))
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OSSOS/MOP | src/ossos/core/scripts/scramble.py | main | def main():
"""Run the script."""
parser = argparse.ArgumentParser()
parser.add_argument('--ccd',
action='store',
type=int,
default=None,
help='which ccd to process')
parser.add_argument("--dbimages",
... | python | def main():
"""Run the script."""
parser = argparse.ArgumentParser()
parser.add_argument('--ccd',
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type=int,
default=None,
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OSSOS/MOP | src/ossos/core/scripts/mk_mopheader.py | mk_mopheader | def mk_mopheader(expnum, ccd, version, dry_run=False, prefix=""):
"""Run the OSSOS mopheader script.
"""
## confirm destination directory exists.
destdir = os.path.dirname(
storage.dbimages_uri(expnum, ccd, prefix=prefix, version=version, ext='fits'))
if not dry_run:
storage.mkdir(d... | python | def mk_mopheader(expnum, ccd, version, dry_run=False, prefix=""):
"""Run the OSSOS mopheader script.
"""
## confirm destination directory exists.
destdir = os.path.dirname(
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OSSOS/MOP | src/jjk/preproc/t.py | read_cands | def read_cands(filename):
"""Read in the contents of a cands comb file"""
import sre
lines=file(filename).readlines()
exps=[]
cands=[]
coo=[]
for line in lines:
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break
exps.append(line[2:].strip())
for line in lines:
if ( ... | python | def read_cands(filename):
"""Read in the contents of a cands comb file"""
import sre
lines=file(filename).readlines()
exps=[]
cands=[]
coo=[]
for line in lines:
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exps.append(line[2:].strip())
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OSSOS/MOP | src/jjk/preproc/t.py | discands | def discands(record):
"""Display the candidates contained in a candidate record list"""
import pyraf, pyfits
pyraf.iraf.tv()
display = pyraf.iraf.tv.display
width=128
cands = record['cands']
exps= record['fileId']
### load some header info from the mophead file
headers=... | python | def discands(record):
"""Display the candidates contained in a candidate record list"""
import pyraf, pyfits
pyraf.iraf.tv()
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width=128
cands = record['cands']
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OSSOS/MOP | src/ossos/core/ossos/planning/ObsStatus.py | query_for_observations | def query_for_observations(mjd, observable, runid_list):
"""Do a QUERY on the TAP service for all observations that are part of runid,
where taken after mjd and have calibration 'observable'.
Schema is at: http://www.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/tap/tables
mjd : float
observable: str ( 2 or ... | python | def query_for_observations(mjd, observable, runid_list):
"""Do a QUERY on the TAP service for all observations that are part of runid,
where taken after mjd and have calibration 'observable'.
Schema is at: http://www.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/tap/tables
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OSSOS/MOP | src/ossos/core/ossos/planning/ObsStatus.py | create_ascii_table | def create_ascii_table(observation_table, outfile):
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Store the result in outfile (could/should be a vospace dataNode)
observation_table: astropy.votable.array object
outfile: str (name of the vospace dataNode to store the result... | python | def create_ascii_table(observation_table, outfile):
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OSSOS/MOP | src/ossos/core/ossos/planning/ObsStatus.py | create_sky_plot | def create_sky_plot(observation_table, outfile):
"""Given a VOTable that describes the observation coverage provide a PDF of the skycoverge.
observation_table: vostable.arrary
outfile: name of file to write results to.
"""
# camera dimensions
width = 0.98
height = 0.98
ax = None
i... | python | def create_sky_plot(observation_table, outfile):
"""Given a VOTable that describes the observation coverage provide a PDF of the skycoverge.
observation_table: vostable.arrary
outfile: name of file to write results to.
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OSSOS/MOP | src/ossos/utils/update_astrometry_files.py | load_observations | def load_observations((observations, regex, rename), path, filenames):
"""
Returns a provisional name based dictionary of observations of the object.
Each observations is keyed on the date. ie. a dictionary of dictionaries.
:rtype : None
:param observations: dictionary to store observtions into
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"""
Returns a provisional name based dictionary of observations of the object.
Each observations is keyed on the date. ie. a dictionary of dictionaries.
:rtype : None
:param observations: dictionary to store observtions into
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OSSOS/MOP | src/ossos/core/ossos/mopheader.py | MOPHeader.writeto | def writeto(self, filename, **kwargs):
"""
Write the header to a fits file.
:param filename:
:return:
"""
fits.PrimaryHDU(header=self).writeto(filename, output_verify='ignore', **kwargs) | python | def writeto(self, filename, **kwargs):
"""
Write the header to a fits file.
:param filename:
:return:
"""
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OSSOS/MOP | src/ossos/core/ossos/mopheader.py | MOPHeader.crpix | def crpix(self):
"""
The location of the reference coordinate in the pixel frame.
First simple respond with the header values, if they don't exist try usnig the DETSEC values
@rtype: float, float
"""
try:
return self.wcs.crpix1, self.wcs.crpix2
except... | python | def crpix(self):
"""
The location of the reference coordinate in the pixel frame.
First simple respond with the header values, if they don't exist try usnig the DETSEC values
@rtype: float, float
"""
try:
return self.wcs.crpix1, self.wcs.crpix2
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OSSOS/MOP | src/ossos/core/ossos/mopheader.py | MOPHeader.mjd_obsc | def mjd_obsc(self):
"""Given a CFHT Megaprime image header compute the center of exposure.
This routine uses the calibration provide by Richard Wainscoat:
From: Richard Wainscoat <rjw@ifa.hawaii.edu>
Subject: Fwd: timing for MegaCam
Date: April 24, 2015 at 7:23:09 PM EDT
... | python | def mjd_obsc(self):
"""Given a CFHT Megaprime image header compute the center of exposure.
This routine uses the calibration provide by Richard Wainscoat:
From: Richard Wainscoat <rjw@ifa.hawaii.edu>
Subject: Fwd: timing for MegaCam
Date: April 24, 2015 at 7:23:09 PM EDT
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Subject: Fwd: timing for MegaCam
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OSSOS/MOP | src/ossos/core/ossos/mopheader.py | MOPHeader.crval | def crval(self):
"""
Get the world coordinate of the reference pixel.
@rtype: float, float
"""
try:
return self.wcs.crval1, self.wcs.crval2
except Exception as ex:
logging.debug("Couldn't get CRVAL from WCS: {}".format(ex))
logging.deb... | python | def crval(self):
"""
Get the world coordinate of the reference pixel.
@rtype: float, float
"""
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OSSOS/MOP | src/ossos/core/ossos/mopheader.py | MOPHeader.pixscale | def pixscale(self):
"""Return the pixel scale of the detector, in arcseconds.
This routine first attempts to compute the size of a pixel using the WCS. Then looks for PIXSCAL in header.
@return: pixscal
@rtype: float
"""
try:
(x, y) = self['NAXIS1'] / 2.0, ... | python | def pixscale(self):
"""Return the pixel scale of the detector, in arcseconds.
This routine first attempts to compute the size of a pixel using the WCS. Then looks for PIXSCAL in header.
@return: pixscal
@rtype: float
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OSSOS/MOP | src/jjk/preproc/MOPphot.py | iraf_phot | def iraf_phot(f,x,y,zmag=26.5,apin=10,skyin=15,skywidth=10):
"""Compute the magnitude of the star at location x/y"""
import pyfits
import re
infits=pyfits.open(f,'update')
f=re.sub(r'.fits$','',f)
### Get my python routines
from pyraf import iraf
from pyraf.irafpar import IrafParLis... | python | def iraf_phot(f,x,y,zmag=26.5,apin=10,skyin=15,skywidth=10):
"""Compute the magnitude of the star at location x/y"""
import pyfits
import re
infits=pyfits.open(f,'update')
f=re.sub(r'.fits$','',f)
### Get my python routines
from pyraf import iraf
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OSSOS/MOP | src/jjk/preproc/rate.py | get_rates | def get_rates(file,au_min=25,au_max=150):
""" Use the rates program to determine the minimum and maximum bounds for planting"""
import os, string
rate_command='rate.pl --file %s %d ' % ( file, au_min)
rate=os.popen(rate_command)
line=rate.readline()
print line
rate.close()
(min_rate, mi... | python | def get_rates(file,au_min=25,au_max=150):
""" Use the rates program to determine the minimum and maximum bounds for planting"""
import os, string
rate_command='rate.pl --file %s %d ' % ( file, au_min)
rate=os.popen(rate_command)
line=rate.readline()
print line
rate.close()
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OSSOS/MOP | src/jjk/preproc/rate.py | kbo_gen | def kbo_gen(file,outfile='objects.list',mmin=22.5,mmax=24.5):
"""Generate a file with object moving at a range of rates and angles"""
header=get_rates(file)
print header
import pyfits
hdulist=pyfits.open(file)
header['xmin']=1
header['xmax']=hdulist[0].header.get('NAXIS1',2048)
header['... | python | def kbo_gen(file,outfile='objects.list',mmin=22.5,mmax=24.5):
"""Generate a file with object moving at a range of rates and angles"""
header=get_rates(file)
print header
import pyfits
hdulist=pyfits.open(file)
header['xmin']=1
header['xmax']=hdulist[0].header.get('NAXIS1',2048)
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OSSOS/MOP | src/ossos/utils/get_image_lists.py | main | def main():
"""
Input asteroid family, filter type, and image type to query SSOIS
"""
parser = argparse.ArgumentParser(description='Run SSOIS and return the available images in a particular filter.')
parser.add_argument("--filter",
action="store",
de... | python | def main():
"""
Input asteroid family, filter type, and image type to query SSOIS
"""
parser = argparse.ArgumentParser(description='Run SSOIS and return the available images in a particular filter.')
parser.add_argument("--filter",
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OSSOS/MOP | src/ossos/utils/get_image_lists.py | get_family_info | def get_family_info(familyname, filtertype='r', imagetype='p'):
"""
Query the ssois table for images of objects in a given family. Then parse through for desired image type,
filter, exposure time, and telescope instrument
"""
# establish input
family_list = '{}/{}_family.txt'.format(_FAMILY_LIS... | python | def get_family_info(familyname, filtertype='r', imagetype='p'):
"""
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OSSOS/MOP | src/ossos/utils/get_image_lists.py | get_member_info | def get_member_info(object_name, filtertype='r', imagetype='p'):
"""
Query the ssois table for images of a given object. Then parse through for desired image type,
filter, exposure time, and telescope instrument
"""
# From the given input, identify the desired filter and rename appropriately ... | python | def get_member_info(object_name, filtertype='r', imagetype='p'):
"""
Query the ssois table for images of a given object. Then parse through for desired image type,
filter, exposure time, and telescope instrument
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OSSOS/MOP | src/ossos/utils/get_image_lists.py | parse_ssois_return | def parse_ssois_return(ssois_return, object_name, imagetype, camera_filter='r.MP9601',
telescope_instrument='CFHT/MegaCam'):
"""
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assert camera_filter in ['r.MP960... | python | def parse_ssois_return(ssois_return, object_name, imagetype, camera_filter='r.MP9601',
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"""
Parse through objects in ssois query and filter out images of desired filter, type, exposure time, and instrument
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OSSOS/MOP | src/ossos/core/ossos/match.py | match_mopfiles | def match_mopfiles(mopfile1, mopfile2):
"""
Given an input list of 'real' detections and candidate detections provide a result file that contains
the measured values from candidate detections with a flag indicating if they are real or false.
@rtype MOPFile
@return mopfile2 with a new column contain... | python | def match_mopfiles(mopfile1, mopfile2):
"""
Given an input list of 'real' detections and candidate detections provide a result file that contains
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@rtype MOPFile
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OSSOS/MOP | src/ossos/core/ossos/match.py | measure_mags | def measure_mags(measures):
"""
Given a list of readings compute the magnitudes for all sources in each reading.
@param measures: list of readings
@return: None
"""
import daophot
image_downloader = ImageDownloader()
observations = {}
for measure in measures:
for reading i... | python | def measure_mags(measures):
"""
Given a list of readings compute the magnitudes for all sources in each reading.
@param measures: list of readings
@return: None
"""
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OSSOS/MOP | src/ossos/core/ossos/match.py | match_planted | def match_planted(fk_candidate_observations, match_filename, bright_limit=BRIGHT_LIMIT, object_planted=OBJECT_PLANTED,
minimum_bright_detections=MINIMUM_BRIGHT_DETECTIONS, bright_fraction=MINIMUM_BRIGHT_FRACTION):
"""
Using the fk_candidate_observations as input get the Object.planted file fro... | python | def match_planted(fk_candidate_observations, match_filename, bright_limit=BRIGHT_LIMIT, object_planted=OBJECT_PLANTED,
minimum_bright_detections=MINIMUM_BRIGHT_DETECTIONS, bright_fraction=MINIMUM_BRIGHT_FRACTION):
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OSSOS/MOP | src/ossos/core/ossos/gui/models/collections.py | StatefulCollection.append | def append(self, item):
"""Adds a new item to the end of the collection."""
if len(self) == 0:
# Special case, we make this the current item
self.index = 0
self.items.append(item) | python | def append(self, item):
"""Adds a new item to the end of the collection."""
if len(self) == 0:
# Special case, we make this the current item
self.index = 0
self.items.append(item) | [
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OSSOS/MOP | src/ossos/utils/vtag_cleanup.py | fix_tags_on_cands_missing_reals | def fix_tags_on_cands_missing_reals(user_id, vos_dir, property):
"At the moment this just checks for a single user's missing reals. Easy to generalise it to all users."
con = context.get_context(vos_dir)
user_progress = []
listing = con.get_listing(tasks.get_suffix('reals'))
mpc_listing = con.get_li... | python | def fix_tags_on_cands_missing_reals(user_id, vos_dir, property):
"At the moment this just checks for a single user's missing reals. Easy to generalise it to all users."
con = context.get_context(vos_dir)
user_progress = []
listing = con.get_listing(tasks.get_suffix('reals'))
mpc_listing = con.get_li... | [
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playpauseandstop/rororo | rororo/schemas/schema.py | Schema.make_error | def make_error(self,
message: str,
*,
error: Exception = None,
# ``error_class: Type[Exception]=None`` doesn't work on
# Python 3.5.2, but that is exact version ran by Read the
# Docs :( More info: http://s... | python | def make_error(self,
message: str,
*,
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# ``error_class: Type[Exception]=None`` doesn't work on
# Python 3.5.2, but that is exact version ran by Read the
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playpauseandstop/rororo | rororo/schemas/schema.py | Schema.make_response | def make_response(self,
data: Any = None,
**kwargs: Any) -> Any:
r"""Validate response data and wrap it inside response factory.
:param data: Response data. Could be ommited.
:param \*\*kwargs: Keyword arguments to be passed to response factory.
... | python | def make_response(self,
data: Any = None,
**kwargs: Any) -> Any:
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:param data: Response data. Could be ommited.
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playpauseandstop/rororo | rororo/schemas/schema.py | Schema.validate_request | def validate_request(self,
data: Any,
*additional: AnyMapping,
merged_class: Type[dict] = dict) -> Any:
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:param data: Request data.
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data: Any,
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playpauseandstop/rororo | rororo/schemas/schema.py | Schema._merge_data | def _merge_data(self, data: AnyMapping, *additional: AnyMapping) -> dict:
r"""Merge base data and additional dicts.
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:param \*additional: Additional data dicts to be merged into base dict.
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:param \*additional: Additional data dicts to be merged into base dict.
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playpauseandstop/rororo | rororo/schemas/schema.py | Schema._pure_data | def _pure_data(self, data: Any) -> Any:
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playpauseandstop/rororo | rororo/schemas/schema.py | Schema._validate | def _validate(self, data: Any, schema: AnyMapping) -> Any:
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:param data: Data to validate.
:param schema: Schema to use for validation.
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OSSOS/MOP | src/ossos/canfar/cadc_certificates.py | getCert | def getCert(certHost=vos.vos.SERVER, certfile=None,
certQuery="/cred/proxyCert?daysValid=",daysValid=2):
"""Access the cadc certificate server"""
if certfile is None:
certfile = os.path.join(os.getenv("HOME","/tmp"),".ssl/cadcproxy.pem")
dirname = os.path.dirname(certfile)
try:
... | python | def getCert(certHost=vos.vos.SERVER, certfile=None,
certQuery="/cred/proxyCert?daysValid=",daysValid=2):
"""Access the cadc certificate server"""
if certfile is None:
certfile = os.path.join(os.getenv("HOME","/tmp"),".ssl/cadcproxy.pem")
dirname = os.path.dirname(certfile)
try:
... | [
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OSSOS/MOP | src/ossos/canfar/cadc_certificates.py | getUserPassword | def getUserPassword(host='www.cadc-ccda.hia-iha.nrc-cnrc.gc.ca'):
""""Getting the username/password for host from .netrc filie """
if os.access(os.path.join(os.environ.get('HOME','/'),".netrc"),os.R_OK):
auth=netrc.netrc().authenticators(host)
else:
auth=False
if not auth:
sys.st... | python | def getUserPassword(host='www.cadc-ccda.hia-iha.nrc-cnrc.gc.ca'):
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OSSOS/MOP | src/ossos/utils/reset_processing_tags.py | clear_tags | def clear_tags(my_expnum, ops_set, my_ccds, dry_run=True):
"""
Clear the tags for the given expnum/ccd set.
@param ops:
@param my_expnum:
@return:
"""
for ops in ops_set:
for fake in ops[0]:
for my_program in ops[1]:
for version in ops[2]:
props = {... | python | def clear_tags(my_expnum, ops_set, my_ccds, dry_run=True):
"""
Clear the tags for the given expnum/ccd set.
@param ops:
@param my_expnum:
@return:
"""
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playpauseandstop/rororo | rororo/utils.py | to_bool | def to_bool(value: Any) -> bool:
"""Convert string or other Python object to boolean.
**Rationalle**
Passing flags is one of the most common cases of using environment vars and
as values are strings we need to have an easy way to convert them to
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"""Convert string or other Python object to boolean.
**Rationalle**
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as values are strings we need to have an easy way to convert them to
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playpauseandstop/rororo | rororo/utils.py | to_int | def to_int(value: str, default: T = None) -> Union[int, Optional[T]]:
"""Convert given value to int.
If conversion failed, return default value without raising Exception.
:param value: Value to convert to int.
:param default: Default value to use in case of failed conversion.
"""
try:
... | python | def to_int(value: str, default: T = None) -> Union[int, Optional[T]]:
"""Convert given value to int.
If conversion failed, return default value without raising Exception.
:param value: Value to convert to int.
:param default: Default value to use in case of failed conversion.
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OSSOS/MOP | src/jjk/preproc/cfeps_object.py | mk_dict | def mk_dict(results,description):
"""Given a result list and descrition sequence, return a list
of dictionaries"""
rows=[]
for row in results:
row_dict={}
for idx in range(len(row)):
col=description[idx][0]
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"""Given a result list and descrition sequence, return a list
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col=description[idx][0]
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OSSOS/MOP | src/jjk/preproc/cfeps_object.py | get_orbits | def get_orbits(official='%'):
"""Query the orbit table for the object whose official desingation
matches parameter official. By default all entries are returned
"""
sql= "SELECT * FROM orbits WHERE official LIKE '%s' " % (official, )
cfeps.execute(sql)
return mk_dict(cfeps.fetchall(),cfep... | python | def get_orbits(official='%'):
"""Query the orbit table for the object whose official desingation
matches parameter official. By default all entries are returned
"""
sql= "SELECT * FROM orbits WHERE official LIKE '%s' " % (official, )
cfeps.execute(sql)
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OSSOS/MOP | src/jjk/preproc/cfeps_object.py | get_astrom | def get_astrom(official='%',provisional='%'):
"""Query the measure table for all measurements of a particular object.
Default is to return all the astrometry in the measure table,
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sql= "SELECT m.* FROM measure m "
sql+="LEFT JOIN object o ON m.provisional LIKE o.provisional "
... | python | def get_astrom(official='%',provisional='%'):
"""Query the measure table for all measurements of a particular object.
Default is to return all the astrometry in the measure table,
sorted by mjdate"""
sql= "SELECT m.* FROM measure m "
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OSSOS/MOP | src/jjk/preproc/cfeps_object.py | getData | def getData(file_id,ra,dec):
"""Create a link that connects to a getData URL"""
DATA="www.cadc-ccda.hia-iha.nrc-cnrc.gc.ca"
BASE="http://"+DATA+"/authProxy/getData"
archive="CFHT"
wcs="corrected"
import re
groups=re.match('^(?P<file_id>\d{6}).*',file_id)
if not groups:
return No... | python | def getData(file_id,ra,dec):
"""Create a link that connects to a getData URL"""
DATA="www.cadc-ccda.hia-iha.nrc-cnrc.gc.ca"
BASE="http://"+DATA+"/authProxy/getData"
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groups=re.match('^(?P<file_id>\d{6}).*',file_id)
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etesync/pyetesync | example_crud.py | EtesyncCRUD.create_event | def create_event(self, event):
"""Create event
Parameters
----------
event : iCalendar file as a string
(calendar containing one event to be added)
"""
ev = api.Event.create(self.journal.collection, event)
ev.save() | python | def create_event(self, event):
"""Create event
Parameters
----------
event : iCalendar file as a string
(calendar containing one event to be added)
"""
ev = api.Event.create(self.journal.collection, event)
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event : iCalendar file as a string
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etesync/pyetesync | example_crud.py | EtesyncCRUD.update_event | def update_event(self, event, uid):
"""Edit event
Parameters
----------
event : iCalendar file as a string
(calendar containing one event to be updated)
uid : uid of event to be updated
"""
ev_for_change = self.calendar.get(uid)
ev_for_change.cont... | python | def update_event(self, event, uid):
"""Edit event
Parameters
----------
event : iCalendar file as a string
(calendar containing one event to be updated)
uid : uid of event to be updated
"""
ev_for_change = self.calendar.get(uid)
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etesync/pyetesync | example_crud.py | EtesyncCRUD.delete_event | def delete_event(self, uid):
"""Delete event and sync calendar
Parameters
----------
uid : uid of event to be deleted
"""
ev_for_deletion = self.calendar.get(uid)
ev_for_deletion.delete() | python | def delete_event(self, uid):
"""Delete event and sync calendar
Parameters
----------
uid : uid of event to be deleted
"""
ev_for_deletion = self.calendar.get(uid)
ev_for_deletion.delete() | [
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JohnVinyard/zounds | zounds/util/persistence.py | simple_lmdb_settings | def simple_lmdb_settings(path, map_size=1e9, user_supplied_id=False):
"""
Creates a decorator that can be used to configure sane default LMDB
persistence settings for a model
Args:
path (str): The path where the LMDB database files will be created
map_size (int): The amount of space to ... | python | def simple_lmdb_settings(path, map_size=1e9, user_supplied_id=False):
"""
Creates a decorator that can be used to configure sane default LMDB
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path (str): The path where the LMDB database files will be created
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JohnVinyard/zounds | zounds/util/persistence.py | simple_in_memory_settings | def simple_in_memory_settings(cls):
"""
Decorator that returns a class that "persists" data in-memory. Mostly
useful for testing
:param cls: the class whose features should be persisted in-memory
:return: A new class that will persist features in memory
"""
class Settings(ff.PersistenceSe... | python | def simple_in_memory_settings(cls):
"""
Decorator that returns a class that "persists" data in-memory. Mostly
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:param cls: the class whose features should be persisted in-memory
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OSSOS/MOP | src/ossos/core/ossos/cameras.py | Camera.offset | def offset(self, index=0):
"""Offset the camera pointing to be centred on a particular CCD."""
eta = self._geometry[self.camera][index]["ra"]
xi = self._geometry[self.camera][index]["dec"]
ra = self.origin.ra - (eta/math.cos(self.dec.radian))*units.degree
dec = self.origin.dec - ... | python | def offset(self, index=0):
"""Offset the camera pointing to be centred on a particular CCD."""
eta = self._geometry[self.camera][index]["ra"]
xi = self._geometry[self.camera][index]["dec"]
ra = self.origin.ra - (eta/math.cos(self.dec.radian))*units.degree
dec = self.origin.dec - ... | [
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OSSOS/MOP | src/ossos/core/ossos/cameras.py | Camera.coord | def coord(self):
"""The center of the camera pointing in sky coordinates"""
if self._coordinate is None:
self._coordinate = SkyCoord(self.origin.ra, self.origin.dec + 45 * units.arcsec)
return self._coordinate | python | def coord(self):
"""The center of the camera pointing in sky coordinates"""
if self._coordinate is None:
self._coordinate = SkyCoord(self.origin.ra, self.origin.dec + 45 * units.arcsec)
return self._coordinate | [
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OSSOS/MOP | src/ossos/core/ossos/cameras.py | Camera.geometry | def geometry(self):
"""Return an array of rectangles that represent the 'ra,dec' corners of the FOV
@rtype: list
"""
if self.coord is None:
return None
ra = self.coord.ra.degree
dec = self.coord.dec.degree
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"""
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OSSOS/MOP | src/ossos/core/ossos/cameras.py | Camera.separation | def separation(self, ra, dec):
"""Compute the separation between self and (ra,dec)"""
if self.coord is None:
return None
return self.coord.separation(SkyCoord(ra, dec, unit=('degree', 'degree'))) | python | def separation(self, ra, dec):
"""Compute the separation between self and (ra,dec)"""
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OSSOS/MOP | src/jjk/preproc/preproc.py | trim | def trim(hdu):
"""TRIM a CFHT MEGAPRIME frame using the DATASEC keyword"""
datasec = re.findall(r'(\d+)',
hdu.header.get('DATASEC'))
l=int(datasec[0])-1
r=int(datasec[1])
b=int(datasec[2])-1
t=int(datasec[3])
if opt.verbose:
print "Trimming [%d:%d,%d:%d]" % ... | python | def trim(hdu):
"""TRIM a CFHT MEGAPRIME frame using the DATASEC keyword"""
datasec = re.findall(r'(\d+)',
hdu.header.get('DATASEC'))
l=int(datasec[0])-1
r=int(datasec[1])
b=int(datasec[2])-1
t=int(datasec[3])
if opt.verbose:
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OSSOS/MOP | src/jjk/preproc/preproc.py | overscan | def overscan(hdu):
"""Overscan subtract a CFHT MEGAPRIME frame.
oversan(hdu) --> status
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A and B) and the AMP sectoin is ASEC[A|B].
"""
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dsec=re.f... | python | def overscan(hdu):
"""Overscan subtract a CFHT MEGAPRIME frame.
oversan(hdu) --> status
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OSSOS/MOP | src/ossos/core/ossos/gui/progress.py | requires_lock | def requires_lock(function):
"""
Decorator to check if the user owns the required lock.
The first argument must be the filename.
"""
def new_lock_requiring_function(self, filename, *args, **kwargs):
if self.owns_lock(filename):
return function(self, filename, *args, **kwargs)
... | python | def requires_lock(function):
"""
Decorator to check if the user owns the required lock.
The first argument must be the filename.
"""
def new_lock_requiring_function(self, filename, *args, **kwargs):
if self.owns_lock(filename):
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OSSOS/MOP | src/ossos/core/ossos/gui/progress.py | LocalProgressManager.clean | def clean(self, suffixes=None):
"""
Remove all persistence-related files from the directory.
"""
if suffixes is None:
suffixes = [DONE_SUFFIX, LOCK_SUFFIX, PART_SUFFIX]
for suffix in suffixes:
listing = self.working_context.get_listing(suffix)
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"""
Remove all persistence-related files from the directory.
"""
if suffixes is None:
suffixes = [DONE_SUFFIX, LOCK_SUFFIX, PART_SUFFIX]
for suffix in suffixes:
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OSSOS/MOP | src/ossos/core/ossos/figures.py | setFigForm | def setFigForm():
"""set the rcparams to EmulateApJ columnwidth=245.26 pts """
fig_width_pt = 245.26*2
inches_per_pt = 1.0/72.27
golden_mean = (math.sqrt(5.)-1.0)/2.0
fig_width = fig_width_pt*inches_per_pt
fig_height = fig_width*golden_mean
fig_size = [1.5*fig_width, fig_height]
pa... | python | def setFigForm():
"""set the rcparams to EmulateApJ columnwidth=245.26 pts """
fig_width_pt = 245.26*2
inches_per_pt = 1.0/72.27
golden_mean = (math.sqrt(5.)-1.0)/2.0
fig_width = fig_width_pt*inches_per_pt
fig_height = fig_width*golden_mean
fig_size = [1.5*fig_width, fig_height]
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OSSOS/MOP | src/ossos/web/web/auth/gms.py | getCert | def getCert(username, password,
certHost=_SERVER,
certfile=None,
certQuery=_PROXY):
"""Access the cadc certificate server."""
if certfile is None:
certfile = tempfile.NamedTemporaryFile()
# Add the username and password.
# If we knew the realm, we could use ... | python | def getCert(username, password,
certHost=_SERVER,
certfile=None,
certQuery=_PROXY):
"""Access the cadc certificate server."""
if certfile is None:
certfile = tempfile.NamedTemporaryFile()
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OSSOS/MOP | src/ossos/web/web/auth/gms.py | getGroupsURL | def getGroupsURL(certfile, group):
"""given a certfile load a list of groups that user is a member of"""
GMS = "https://" + _SERVER + _GMS
certfile.seek(0)
buf = certfile.read()
x509 = crypto.load_certificate(crypto.FILETYPE_PEM, buf)
sep = ""
dn = ""
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for i in x509.get_... | python | def getGroupsURL(certfile, group):
"""given a certfile load a list of groups that user is a member of"""
GMS = "https://" + _SERVER + _GMS
certfile.seek(0)
buf = certfile.read()
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dn = ""
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OSSOS/MOP | src/ossos/web/web/auth/gms.py | isMember | def isMember(userid, password, group):
"""Test to see if the given userid/password combo is an authenticated member of group.
userid: CADC Username (str)
password: CADC Password (str)
group: CADC GMS group (str)
"""
try:
certfile = getCert(userid, password)
group_url = get... | python | def isMember(userid, password, group):
"""Test to see if the given userid/password combo is an authenticated member of group.
userid: CADC Username (str)
password: CADC Password (str)
group: CADC GMS group (str)
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certfile = getCert(userid, password)
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OSSOS/MOP | src/ossos/web/web/auth/gms.py | stub | def stub():
"""Just some left over code"""
form = cgi.FieldStorage()
userid = form['userid'].value
password = form['passwd'].value
group = form['group'].value | python | def stub():
"""Just some left over code"""
form = cgi.FieldStorage()
userid = form['userid'].value
password = form['passwd'].value
group = form['group'].value | [
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OSSOS/MOP | src/ossos/core/ossos/wcs.py | sky2xypv | def sky2xypv(ra, dec, crpix1, crpix2, crval1, crval2, dc, pv, nord, maxiter=300):
"""
Transforms from celestial coordinates to pixel coordinates to taking
non-linear distortion into account with the World Coordinate System
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For the inverse operation see xy2sky.
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Transforms from celestial coordinates to pixel coordinates to taking
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OSSOS/MOP | src/ossos/core/ossos/wcs.py | xy2skypv | def xy2skypv(x, y, crpix1, crpix2, crval1, crval2, cd, pv, nord):
"""
Transforms from pixel coordinates to celestial coordinates taking
non-linear distortion into account with the World Coordinate System
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Transforms from pixel coordinates to celestial coordinates taking
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OSSOS/MOP | src/ossos/core/ossos/wcs.py | parse_pv | def parse_pv(header):
"""
Parses the PV array from an astropy FITS header.
Args:
header: astropy.io.fits.header.Header
The header containing the PV values.
Returns:
cd: 2d array (list(list(float))
[[PV1_0, PV1_1, ... PV1_N], [PV2_0, PV2_1, ... PV2_N]]
Note that N de... | python | def parse_pv(header):
"""
Parses the PV array from an astropy FITS header.
Args:
header: astropy.io.fits.header.Header
The header containing the PV values.
Returns:
cd: 2d array (list(list(float))
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JohnVinyard/zounds | zounds/nputil/npx.py | safe_unit_norm | def safe_unit_norm(a):
"""
Ensure that the vector or vectors have unit norm
"""
if 1 == len(a.shape):
n = np.linalg.norm(a)
if n:
return a / n
return a
norm = np.sum(np.abs(a) ** 2, axis=-1) ** (1. / 2)
# Dividing by a norm of zero will cause a warning to be... | python | def safe_unit_norm(a):
"""
Ensure that the vector or vectors have unit norm
"""
if 1 == len(a.shape):
n = np.linalg.norm(a)
if n:
return a / n
return a
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JohnVinyard/zounds | zounds/nputil/npx.py | pad | def pad(a, desiredlength):
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"""
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Pad an n-dimensional numpy array with zeros along the zero-th dimension
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JohnVinyard/zounds | zounds/nputil/npx.py | _wpad | def _wpad(l, windowsize, stepsize):
"""
Parameters
l - The length of the input array
windowsize - the size of each window of samples
stepsize - the number of samples to move the window each step
Returns
The length the input array should be so that no samples are leftover
... | python | def _wpad(l, windowsize, stepsize):
"""
Parameters
l - The length of the input array
windowsize - the size of each window of samples
stepsize - the number of samples to move the window each step
Returns
The length the input array should be so that no samples are leftover
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JohnVinyard/zounds | zounds/nputil/npx.py | _wcut | def _wcut(l, windowsize, stepsize):
"""
Parameters
l - The length of the input array
windowsize - the size of each window of samples
stepsize - the number of samples to move the window each step
Returns
The length the input array should be so that leftover samples are ignore... | python | def _wcut(l, windowsize, stepsize):
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l - The length of the input array
windowsize - the size of each window of samples
stepsize - the number of samples to move the window each step
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JohnVinyard/zounds | zounds/nputil/npx.py | windowed | def windowed(a, windowsize, stepsize=None, dopad=False):
"""
Parameters
a - the input array to restructure into overlapping windows
windowsize - the size of each window of samples
stepsize - the number of samples to shift the window each step. If not
speci... | python | def windowed(a, windowsize, stepsize=None, dopad=False):
"""
Parameters
a - the input array to restructure into overlapping windows
windowsize - the size of each window of samples
stepsize - the number of samples to shift the window each step. If not
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JohnVinyard/zounds | zounds/nputil/npx.py | Growable.append | def append(self, item):
"""
append a single item to the array, growing the wrapped numpy array
if necessary
"""
try:
self._data[self._position] = item
except IndexError:
self._grow()
self._data[self._position] = item
self._posit... | python | def append(self, item):
"""
append a single item to the array, growing the wrapped numpy array
if necessary
"""
try:
self._data[self._position] = item
except IndexError:
self._grow()
self._data[self._position] = item
self._posit... | [
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JohnVinyard/zounds | zounds/nputil/npx.py | Growable.extend | def extend(self, items):
"""
extend the numpy array with multiple items, growing the wrapped array
if necessary
"""
items = np.array(items)
pos = items.shape[0] + self.logical_size
if pos > self.physical_size:
# more physical memory is needed than has ... | python | def extend(self, items):
"""
extend the numpy array with multiple items, growing the wrapped array
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"""
items = np.array(items)
pos = items.shape[0] + self.logical_size
if pos > self.physical_size:
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OSSOS/MOP | src/ossos/core/ossos/fitsviewer/baseviewer.py | WxMPLFitsViewer.display | def display(self, cutout, use_pixel_coords=False):
"""
:param cutout: source cutout object to be display
:type cutout: source.SourceCutout
"""
logging.debug("Current display list contains: {}".format(self._displayables_by_cutout.keys()))
logging.debug("Looking for {}".for... | python | def display(self, cutout, use_pixel_coords=False):
"""
:param cutout: source cutout object to be display
:type cutout: source.SourceCutout
"""
logging.debug("Current display list contains: {}".format(self._displayables_by_cutout.keys()))
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OSSOS/MOP | src/ossos/core/ossos/fitsviewer/baseviewer.py | WxMPLFitsViewer.draw_uncertainty_ellipse | def draw_uncertainty_ellipse(self, cutout):
"""
Draws an ErrEllipse with the spcified dimensions. Only one ErrEllipse can be drawn and
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"""
if not self.mark_prediction:
return
try:
colour = cutout.reading.from_input_file a... | python | def draw_uncertainty_ellipse(self, cutout):
"""
Draws an ErrEllipse with the spcified dimensions. Only one ErrEllipse can be drawn and
only once (not movable).
"""
if not self.mark_prediction:
return
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OSSOS/MOP | src/ossos/core/ossos/fitsviewer/baseviewer.py | WxMPLFitsViewer.align | def align(self, cutout, reading, source):
"""
Set the display center to the reference point.
@param cutout: The cutout to align on
@type cutout: SourceCutout
@param reading: The reading this cutout is from
@type reading: SourceReading
@param source: The source ... | python | def align(self, cutout, reading, source):
"""
Set the display center to the reference point.
@param cutout: The cutout to align on
@type cutout: SourceCutout
@param reading: The reading this cutout is from
@type reading: SourceReading
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OSSOS/MOP | src/ossos/core/ossos/daophot.py | phot | def phot(fits_filename, x_in, y_in, aperture=15, sky=20, swidth=10, apcor=0.3,
maxcount=30000.0, exptime=1.0, zmag=None, extno=0, centroid=True):
"""
Compute the centroids and magnitudes of a bunch sources on fits image.
:rtype : astropy.table.Table
:param fits_filename: Name of fits image to... | python | def phot(fits_filename, x_in, y_in, aperture=15, sky=20, swidth=10, apcor=0.3,
maxcount=30000.0, exptime=1.0, zmag=None, extno=0, centroid=True):
"""
Compute the centroids and magnitudes of a bunch sources on fits image.
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OSSOS/MOP | src/ossos/core/ossos/daophot.py | phot_mag | def phot_mag(*args, **kwargs):
"""Wrapper around phot which only returns the computed magnitude directly."""
try:
return phot(*args, **kwargs)
except IndexError:
raise TaskError("No photometric records returned for {0}".format(kwargs)) | python | def phot_mag(*args, **kwargs):
"""Wrapper around phot which only returns the computed magnitude directly."""
try:
return phot(*args, **kwargs)
except IndexError:
raise TaskError("No photometric records returned for {0}".format(kwargs)) | [
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OSSOS/MOP | src/ossos/web/web/block/queries.py | BlockQuery.all_blocks | def all_blocks(self):
status = OrderedDict.fromkeys(parameters.BLOCKS.keys())
status['13AE'] = ['discovery complete', '50', '24.05']
status['13AO'] = ['discovery complete', '36', '24.40']
status['13BL'] = ['discovery complete', '79', '24.48']
status['14BH'] = ['discovery running... | python | def all_blocks(self):
status = OrderedDict.fromkeys(parameters.BLOCKS.keys())
status['13AE'] = ['discovery complete', '50', '24.05']
status['13AO'] = ['discovery complete', '36', '24.40']
status['13BL'] = ['discovery complete', '79', '24.48']
status['14BH'] = ['discovery running... | [
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playpauseandstop/rororo | rororo/settings.py | from_env | def from_env(key: str, default: T = None) -> Union[str, Optional[T]]:
"""Shortcut for safely reading environment variable.
:param key: Environment var key.
:param default:
Return default value if environment var not found by given key. By
default: ``None``
"""
return os.getenv(key, ... | python | def from_env(key: str, default: T = None) -> Union[str, Optional[T]]:
"""Shortcut for safely reading environment variable.
:param key: Environment var key.
:param default:
Return default value if environment var not found by given key. By
default: ``None``
"""
return os.getenv(key, ... | [
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