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OSSOS/MOP | src/ossos/core/ossos/planning/obs_planner.py | Plot.ossos_pointings | def ossos_pointings(self):
"""
plot an OSSOS observation on the OSSOS plot.
"""
match = re.match('(\d+)\D(\d+)', self.expnum.get())
if match is not None:
expnum = int(match.group(1))
ccd = int(match.group(2))
x = 2112 / 2.0
y = 4644... | python | def ossos_pointings(self):
"""
plot an OSSOS observation on the OSSOS plot.
"""
match = re.match('(\d+)\D(\d+)', self.expnum.get())
if match is not None:
expnum = int(match.group(1))
ccd = int(match.group(2))
x = 2112 / 2.0
y = 4644... | [
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OSSOS/MOP | src/ossos/core/ossos/planning/obs_planner.py | Plot.get_pointings | def get_pointings(self):
"""
Retrieve the MEGACAM pointings that overlap with the current FOV and plot.
@return: None
"""
self.camera.set("MEGACAM_40")
(ra1, dec1) = self.c2p((self.canvasx(1), self.canvasy(1)))
(ra2, dec2) = self.c2p((self.canvasx(480 * 2), self.... | python | def get_pointings(self):
"""
Retrieve the MEGACAM pointings that overlap with the current FOV and plot.
@return: None
"""
self.camera.set("MEGACAM_40")
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OSSOS/MOP | src/ossos/core/ossos/planning/obs_planner.py | Plot.save_pointings | def save_pointings(self):
"""Print the currently defined FOVs"""
i = 0
if self.pointing_format.get() in ['GEMINI ET', 'CFHT ET', 'CFHT API']:
logging.info('Beginning table pointing save.')
for pointing in self.pointings:
name = pointing["label"]["text"]
... | python | def save_pointings(self):
"""Print the currently defined FOVs"""
i = 0
if self.pointing_format.get() in ['GEMINI ET', 'CFHT ET', 'CFHT API']:
logging.info('Beginning table pointing save.')
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OSSOS/MOP | src/ossos/core/ossos/planning/obs_planner.py | Plot.doplot | def doplot(self):
"""
Clear the plot and then redraw it.
"""
w = self
w.delete(ALL)
w.coord_grid()
w.objList.delete(0, END)
self._plot() | python | def doplot(self):
"""
Clear the plot and then redraw it.
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w.coord_grid()
w.objList.delete(0, END)
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OSSOS/MOP | src/ossos/core/ossos/planning/obs_planner.py | Plot._plot | def _plot(self):
"""Draw the actual plot.
"""
w = self
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"""Draw the actual plot.
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w = self
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OSSOS/MOP | src/ossos/utils/match.py | planted | def planted(fk_candidate_observations, planted_objects, tolerance=10):
"""
Using the fk_candidate_observations as input get the Object.planted file from VOSpace and match
planted sources with found sources.
The Object.planted list is pulled from VOSpace based on the standard file-layout and name of the... | python | def planted(fk_candidate_observations, planted_objects, tolerance=10):
"""
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OSSOS/MOP | src/jjk/preproc/MOPcoord.py | mjd2gmst | def mjd2gmst(mjd):
"""Convert Modfied Juian Date (JD = 2400000.5) to GMST
Take from P.T. Walace routines"""
D2PI= 6.2831853071795864769252867665590057683943387987502
DS2R= 7.2722052166430399038487115353692196393452995355905e-5
tu = (mjd-51544.5)/36525.0;
st = fmod(mjd,1.0) * ... | python | def mjd2gmst(mjd):
"""Convert Modfied Juian Date (JD = 2400000.5) to GMST
Take from P.T. Walace routines"""
D2PI= 6.2831853071795864769252867665590057683943387987502
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OSSOS/MOP | src/jjk/preproc/MOPcoord.py | coord.ec2eq | def ec2eq(self):
"""Convert ecliptic coordinates to equatorial coordinates"""
import math
#from numpy.matlib import sin, cos, arcsin, arctan2
from math import sin, cos
from math import asin as arcsin
from math import atan2 as arctan2
from math import acos as arcc... | python | def ec2eq(self):
"""Convert ecliptic coordinates to equatorial coordinates"""
import math
#from numpy.matlib import sin, cos, arcsin, arctan2
from math import sin, cos
from math import asin as arcsin
from math import atan2 as arctan2
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OSSOS/MOP | src/ossos/core/ossos/planning/layout36.py | plot_line | def plot_line(axes, fname, ltype):
"""plot the ecliptic plane line on the given axes."""
x = np.genfromtxt(fname, unpack=True)
axes.plot(x[0], x[1], ltype) | python | def plot_line(axes, fname, ltype):
"""plot the ecliptic plane line on the given axes."""
x = np.genfromtxt(fname, unpack=True)
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OSSOS/MOP | src/ossos/core/ossos/parameters.py | apmag_at_absmag | def apmag_at_absmag(H, d, phi=1):
"""
Calculate the apparent magnitude of a TNO given its absolute magnitude H, for a given distance.
:param H: TNO absolute magnitude (unitless)
:param d: barycentric distance (AU)
:param phi: phase angle (0-1, always v close to 1 for TNOs)
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"""
Calculate the apparent magnitude of a TNO given its absolute magnitude H, for a given distance.
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:param d: barycentric distance (AU)
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OSSOS/MOP | src/ossos/core/ossos/parameters.py | tno.from_summary_line | def from_summary_line(cls, summaryLine, version=4, existing_object=None):
''' Summary format:
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a ..E e ..E i ..E node ..E argperi ..E M ..E ra_dis dec_dis
'''
if not summaryLi... | python | def from_summary_line(cls, summaryLine, version=4, existing_object=None):
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OSSOS/MOP | src/ossos/core/ossos/parameters.py | tno.from_class_line | def from_class_line(cls, classLine, version=4, existing_object=None):
'''
Class format:
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openstack/python-scciclient | scciclient/irmc/scci.py | scci_cmd | def scci_cmd(host, userid, password, cmd, port=443, auth_method='basic',
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"""execute SCCI command
This function calls SCCI server modules
:param host: hostname or IP of iRMC
:param userid: userid for iRMC with administrator privileges
:param ... | python | def scci_cmd(host, userid, password, cmd, port=443, auth_method='basic',
client_timeout=60, do_async=True, **kwargs):
"""execute SCCI command
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:param host: hostname or IP of iRMC
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openstack/python-scciclient | scciclient/irmc/scci.py | get_client | def get_client(host, userid, password, port=443, auth_method='basic',
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"""get SCCI command partial function
This function returns SCCI command partial function
:param host: hostname or IP of iRMC
:param userid: userid for iRMC with administrator privileges
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openstack/python-scciclient | scciclient/irmc/scci.py | get_virtual_cd_set_params_cmd | def get_virtual_cd_set_params_cmd(remote_image_server,
remote_image_user_domain,
remote_image_share_type,
remote_image_share_name,
remote_image_deploy_iso,
... | python | def get_virtual_cd_set_params_cmd(remote_image_server,
remote_image_user_domain,
remote_image_share_type,
remote_image_share_name,
remote_image_deploy_iso,
... | [
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openstack/python-scciclient | scciclient/irmc/scci.py | get_virtual_fd_set_params_cmd | def get_virtual_fd_set_params_cmd(remote_image_server,
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remote_image_floppy_fat,
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openstack/python-scciclient | scciclient/irmc/scci.py | get_report | def get_report(host, userid, password,
port=443, auth_method='basic', client_timeout=60):
"""get iRMC report
This function returns iRMC report in XML format
:param host: hostname or IP of iRMC
:param userid: userid for iRMC with administrator privileges
:param password: password for ... | python | def get_report(host, userid, password,
port=443, auth_method='basic', client_timeout=60):
"""get iRMC report
This function returns iRMC report in XML format
:param host: hostname or IP of iRMC
:param userid: userid for iRMC with administrator privileges
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openstack/python-scciclient | scciclient/irmc/scci.py | get_essential_properties | def get_essential_properties(report, prop_keys):
"""get essential properties
This function returns a dictionary which contains keys as in
prop_keys and its values from the report.
:param report: SCCI report element
:param prop_keys: a list of keys for essential properties
:returns: a dictionar... | python | def get_essential_properties(report, prop_keys):
"""get essential properties
This function returns a dictionary which contains keys as in
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:param report: SCCI report element
:param prop_keys: a list of keys for essential properties
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openstack/python-scciclient | scciclient/irmc/scci.py | get_capabilities_properties | def get_capabilities_properties(d_info,
capa_keys,
gpu_ids,
fpga_ids=None,
**kwargs):
"""get capabilities properties
This function returns a dictionary which contains keys
and the... | python | def get_capabilities_properties(d_info,
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fpga_ids=None,
**kwargs):
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openstack/python-scciclient | scciclient/irmc/scci.py | process_session_status | def process_session_status(irmc_info, session_timeout, upgrade_type):
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:param irmc_info: node info
:param session_timeout: session timeout
:param upgrade_type: flag to check upgrade with bios or irmc
:return: a dict with foll... | python | def process_session_status(irmc_info, session_timeout, upgrade_type):
"""process session for Bios config backup/restore or RAID config operation
:param irmc_info: node info
:param session_timeout: session timeout
:param upgrade_type: flag to check upgrade with bios or irmc
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openstack/python-scciclient | scciclient/irmc/scci.py | get_raid_fgi_status | def get_raid_fgi_status(report):
"""Gather fgi(foreground initialization) information of raid configuration
This function returns a fgi status which contains activity status
and its values from the report.
:param report: SCCI report information
:returns: dict of fgi status of logical_drives, such ... | python | def get_raid_fgi_status(report):
"""Gather fgi(foreground initialization) information of raid configuration
This function returns a fgi status which contains activity status
and its values from the report.
:param report: SCCI report information
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openstack/python-scciclient | scciclient/irmc/scci.py | get_firmware_upgrade_status | def get_firmware_upgrade_status(irmc_info, upgrade_type):
"""get firmware upgrade status of bios or irmc
:param irmc_info: dict of iRMC params to access the server node
{
'irmc_address': host,
'irmc_username': user_id,
'irmc_password': password,
'irmc_port': 80 o... | python | def get_firmware_upgrade_status(irmc_info, upgrade_type):
"""get firmware upgrade status of bios or irmc
:param irmc_info: dict of iRMC params to access the server node
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OSSOS/MOP | src/jjk/preproc/median.py | median | def median(ma):
""" do it row by row, to save memory...."""
_median = 0*ma[0].filled(fill_value=0)
for i in range(ma.shape[-1]):
t=xmedian(ma[:,:,i])
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t=None
return _median | python | def median(ma):
""" do it row by row, to save memory...."""
_median = 0*ma[0].filled(fill_value=0)
for i in range(ma.shape[-1]):
t=xmedian(ma[:,:,i])
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OSSOS/MOP | src/jjk/preproc/median.py | xmedian | def xmedian(ma):
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OSSOS/MOP | src/ossos/core/ossos/naming.py | _generate_provisional_name | def _generate_provisional_name(q, astrom_header, fits_header):
"""
Generates a name for an object given the information in its astrom
observation header and FITS header.
:param q: a queue of provisional names to return.
:type q: Queue
:param astrom_header:
:param fits_header:
"""
whi... | python | def _generate_provisional_name(q, astrom_header, fits_header):
"""
Generates a name for an object given the information in its astrom
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:param fits_header:
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OSSOS/MOP | src/ossos/core/ossos/gui/controllers.py | AbstractController.on_toggle_autoplay_key | def on_toggle_autoplay_key(self):
"""
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self.autoplay_manager.start_autop... | python | def on_toggle_autoplay_key(self):
"""
The user has pressed the keybind for toggling autoplay.
"""
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self.autoplay_manager.stop_autoplay()
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OSSOS/MOP | src/ossos/core/ossos/gui/controllers.py | ProcessRealsController.on_accept | def on_accept(self, auto=False):
"""
Initiates acceptance procedure, gathering required data.
@param auto: Set on_accept to automatic measure of source?
"""
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else:... | python | def on_accept(self, auto=False):
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Initiates acceptance procedure, gathering required data.
@param auto: Set on_accept to automatic measure of source?
"""
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OSSOS/MOP | src/ossos/core/ossos/gui/controllers.py | ProcessRealsController.on_do_accept | def on_do_accept(self,
minor_planet_number,
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note1,
note2,
date_of_obs,
ra,
dec,
obs_mag,
obs_mag_err,
... | python | def on_do_accept(self,
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dec,
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OSSOS/MOP | src/ossos/core/ossos/gui/controllers.py | ProcessVettingController.on_do_accept | def on_do_accept(self, comment):
"""
WARNING WARNING: THIS IS ACUTALLY on_do_accept BUT HACKED.
TODO: Make it so that we have a short 'vetting' accept dialogue. Current accept dialogue too heavy for
this part of process, thus the hack.
Process the rejection of a vetting cand... | python | def on_do_accept(self, comment):
"""
WARNING WARNING: THIS IS ACUTALLY on_do_accept BUT HACKED.
TODO: Make it so that we have a short 'vetting' accept dialogue. Current accept dialogue too heavy for
this part of process, thus the hack.
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OSSOS/MOP | src/ossos/core/ossos/gui/controllers.py | ProcessTracksController.on_load_comparison | def on_load_comparison(self, research=False):
"""
Display the comparison image
@param research: find a new comparison image even if one already known?
"""
cutout = self.model.get_current_cutout()
if research:
cutout.comparison_image_index = None
compa... | python | def on_load_comparison(self, research=False):
"""
Display the comparison image
@param research: find a new comparison image even if one already known?
"""
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OSSOS/MOP | src/ossos/core/scripts/step2.py | compute_trans | def compute_trans(expnums, ccd, version, prefix=None, default="WCS"):
"""
Pull the astrometric header for each image, compute an x/y transform and compare to trans.jmp
this one overides trans.jmp if they are very different.
@param expnums:
@param ccd:
@param version:
@param prefix:
@ret... | python | def compute_trans(expnums, ccd, version, prefix=None, default="WCS"):
"""
Pull the astrometric header for each image, compute an x/y transform and compare to trans.jmp
this one overides trans.jmp if they are very different.
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OSSOS/MOP | src/ossos/core/scripts/step2.py | step2 | def step2(expnums, ccd, version, prefix=None, dry_run=False, default="WCS"):
"""run the actual step2 on the given exp/ccd combo"""
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OSSOS/MOP | src/ossos/plotting/scripts/plot_aq.py | parse_nate_sims | def parse_nate_sims(path):
'''
parts0.dat) contains the id number, particle fraction (ignore) a, ecc, inc, long. asc., arg. per, and mean anomaly
for every particle in the simulation at t=0.
The second (parts3999.dat) contains the same info at t=3.999 Gyrs for these particles.
:return:
'''
... | python | def parse_nate_sims(path):
'''
parts0.dat) contains the id number, particle fraction (ignore) a, ecc, inc, long. asc., arg. per, and mean anomaly
for every particle in the simulation at t=0.
The second (parts3999.dat) contains the same info at t=3.999 Gyrs for these particles.
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openstack/python-scciclient | scciclient/irmc/viom/client.py | _convert_netmask | def _convert_netmask(mask):
"""Convert netmask from CIDR format(integer) to doted decimal string."""
if mask not in range(0, 33):
raise scci.SCCIInvalidInputError(
'Netmask value is invalid.')
return socket.inet_ntoa(struct.pack(
'!L', int('1' * mask + '0' * (32 - mask), 2))) | python | def _convert_netmask(mask):
"""Convert netmask from CIDR format(integer) to doted decimal string."""
if mask not in range(0, 33):
raise scci.SCCIInvalidInputError(
'Netmask value is invalid.')
return socket.inet_ntoa(struct.pack(
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openstack/python-scciclient | scciclient/irmc/viom/client.py | VIOMConfiguration.apply | def apply(self, reboot=False):
"""Apply the configuration to iRMC."""
self.root.use_virtual_addresses = True
self.root.manage.manage = True
self.root.mode = 'new'
self.root.init_boot = reboot
self.client.set_profile(self.root.get_json()) | python | def apply(self, reboot=False):
"""Apply the configuration to iRMC."""
self.root.use_virtual_addresses = True
self.root.manage.manage = True
self.root.mode = 'new'
self.root.init_boot = reboot
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openstack/python-scciclient | scciclient/irmc/viom/client.py | VIOMConfiguration.terminate | def terminate(self, reboot=False):
"""Delete VIOM configuration from iRMC."""
self.root.manage.manage = False
self.root.mode = 'delete'
self.root.init_boot = reboot
self.client.set_profile(self.root.get_json()) | python | def terminate(self, reboot=False):
"""Delete VIOM configuration from iRMC."""
self.root.manage.manage = False
self.root.mode = 'delete'
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openstack/python-scciclient | scciclient/irmc/viom/client.py | VIOMConfiguration.set_lan_port | def set_lan_port(self, port_id, mac=None):
"""Set LAN port information to configuration.
:param port_id: Physical port ID.
:param mac: virtual MAC address if virtualization is necessary.
"""
port_handler = _parse_physical_port_id(port_id)
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"""Set LAN port information to configuration.
:param port_id: Physical port ID.
:param mac: virtual MAC address if virtualization is necessary.
"""
port_handler = _parse_physical_port_id(port_id)
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openstack/python-scciclient | scciclient/irmc/viom/client.py | VIOMConfiguration.set_iscsi_volume | def set_iscsi_volume(self, port_id,
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target_dhcp=False, target_iqn=None, target_ip=None,
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openstack/python-scciclient | scciclient/irmc/viom/client.py | VIOMConfiguration.set_fc_volume | def set_fc_volume(self, port_id,
target_wwn, target_lun=0, boot_prio=1,
initiator_wwnn=None, initiator_wwpn=None):
"""Set FibreChannel volume information to configuration.
:param port_id: Physical port ID.
:param target_wwn: WWN of target.
:pa... | python | def set_fc_volume(self, port_id,
target_wwn, target_lun=0, boot_prio=1,
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openstack/python-scciclient | scciclient/irmc/viom/client.py | VIOMConfiguration._pad_former_ports | def _pad_former_ports(self, port_handler):
"""Create ports with former port index.
:param port_handler: Port information to be registered.
Depending on slot type and card type, it is necessary to register
LAN ports with former index to VIOM table.
"""
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"""Create ports with former port index.
:param port_handler: Port information to be registered.
Depending on slot type and card type, it is necessary to register
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JohnVinyard/zounds | zounds/soundfile/byte_depth.py | chunk_size_samples | def chunk_size_samples(sf, buf):
"""
Black magic to account for the fact that libsndfile's behavior varies
depending on file format when using the virtual io api.
If you ask for more samples from an ogg or flac file than are available
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"""
Black magic to account for the fact that libsndfile's behavior varies
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OSSOS/MOP | src/ossos/core/ossos/coding.py | encode | def encode(number, alphabet):
"""
Converts an integer to a base n string where n is the length of the
provided alphabet.
Modified from http://en.wikipedia.org/wiki/Base_36
"""
if not isinstance(number, (int, long)):
raise TypeError("Number must be an integer.")
base_n = ""
sign... | python | def encode(number, alphabet):
"""
Converts an integer to a base n string where n is the length of the
provided alphabet.
Modified from http://en.wikipedia.org/wiki/Base_36
"""
if not isinstance(number, (int, long)):
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JohnVinyard/zounds | zounds/timeseries/functional.py | categorical | def categorical(x, mu=255, normalize=True):
"""
Mu-law compress a block of audio samples, and convert them into a
categorical distribution
"""
if normalize:
# normalize the signal
mx = x.max()
x = np.divide(x, mx, where=mx != 0)
# mu law compression
x = mu_law(x)
... | python | def categorical(x, mu=255, normalize=True):
"""
Mu-law compress a block of audio samples, and convert them into a
categorical distribution
"""
if normalize:
# normalize the signal
mx = x.max()
x = np.divide(x, mx, where=mx != 0)
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JohnVinyard/zounds | zounds/timeseries/functional.py | inverse_categorical | def inverse_categorical(x, mu=255):
"""
Invert categorical samples
"""
flat = x.reshape((-1, x.shape[-1]))
indices = np.argmax(flat, axis=1).astype(np.float32)
indices = (indices / mu) - 0.5
inverted = inverse_mu_law(indices, mu=mu).reshape(x.shape[:-1])
return ArrayWithUnits(inverted, x... | python | def inverse_categorical(x, mu=255):
"""
Invert categorical samples
"""
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indices = np.argmax(flat, axis=1).astype(np.float32)
indices = (indices / mu) - 0.5
inverted = inverse_mu_law(indices, mu=mu).reshape(x.shape[:-1])
return ArrayWithUnits(inverted, x... | [
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JohnVinyard/zounds | zounds/synthesize/synthesize.py | SineSynthesizer.synthesize | def synthesize(self, duration, freqs_in_hz=[440.]):
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JohnVinyard/zounds | zounds/synthesize/synthesize.py | TickSynthesizer.synthesize | def synthesize(self, duration, tick_frequency):
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duration (numpy.timedelta64): The total duration of the sound to be
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"""
Synthesize periodic "ticks", generated from white noise and an envelope
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duration (numpy.timedelta64): The total duration of the sound to be
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JohnVinyard/zounds | zounds/synthesize/synthesize.py | NoiseSynthesizer.synthesize | def synthesize(self, duration):
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duration (numpy.timedelta64): The duration of the synthesized sound
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"""
Synthesize white noise
Args:
duration (numpy.timedelta64): The duration of the synthesized sound
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OSSOS/MOP | src/ossos/core/ossos/gui/models/workload.py | TracksWorkUnit.query_ssos | def query_ssos(self):
"""
Use the MPC file that has been built up in processing this work
unit to generate another workunit.
"""
self._ssos_queried = True
mpc_filename = self.save()
return self.builder.build_workunit(mpc_filename) | python | def query_ssos(self):
"""
Use the MPC file that has been built up in processing this work
unit to generate another workunit.
"""
self._ssos_queried = True
mpc_filename = self.save()
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OSSOS/MOP | src/ossos/core/ossos/gui/models/workload.py | TracksWorkUnit.save | def save(self):
"""
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"""
self.get_writer().flush()
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"""
Update the SouceReading information for the currently recorded observations and then flush those to a file.
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self.get_writer().flush()
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OSSOS/MOP | src/ossos/core/ossos/gui/models/workload.py | TracksWorkUnit.get_writer | def get_writer(self):
"""
Get a writer.
This method also makes the output filename be the same as the .track file but with .mpc.
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:rtype MPCWriter
"""
if self._writer is None:
suffix = tasks.get_suffix(tasks.T... | python | def get_writer(self):
"""
Get a writer.
This method also makes the output filename be the same as the .track file but with .mpc.
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:rtype MPCWriter
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OSSOS/MOP | src/ossos/core/ossos/gui/models/workload.py | WorkUnitProvider._filter | def _filter(self, filename):
"""
return 'true' if filename doesn't match name_filter regex and should be filtered out of the list.
@param filename:
@return:
"""
return self.name_filter is not None and re.search(self.name_filter, filename) is None | python | def _filter(self, filename):
"""
return 'true' if filename doesn't match name_filter regex and should be filtered out of the list.
@param filename:
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OSSOS/MOP | src/ossos/core/ossos/gui/models/workload.py | WorkUnitProvider.get_workunit | def get_workunit(self, ignore_list=None):
"""
Gets a new unit of work.
Args:
ignore_list: list(str)
A list of filenames which should be ignored. Defaults to None.
Returns:
new_workunit: WorkUnit
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"""
Gets a new unit of work.
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ignore_list: list(str)
A list of filenames which should be ignored. Defaults to None.
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OSSOS/MOP | src/ossos/core/ossos/gui/models/workload.py | WorkUnitProvider.get_potential_files | def get_potential_files(self, ignore_list):
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"""
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OSSOS/MOP | src/ossos/core/ossos/gui/models/workload.py | TracksWorkUnitBuilder.move_discovery_to_front | def move_discovery_to_front(self, data):
"""
Moves the discovery triplet to the front of the reading list.
Leaves everything else in the same order.
"""
readings = self.get_readings(data)
discovery_index = self.get_discovery_index(data)
reordered_readings = (read... | python | def move_discovery_to_front(self, data):
"""
Moves the discovery triplet to the front of the reading list.
Leaves everything else in the same order.
"""
readings = self.get_readings(data)
discovery_index = self.get_discovery_index(data)
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OSSOS/MOP | src/ossos/core/ossos/planning/megacam.py | TAPQuery | def TAPQuery(RAdeg=180.0, DECdeg=0.0, width=1, height=1):
"""Do a query of the CADC Megacam table. Get all observations insize the box. Returns a file-like object"""
QUERY =( """ SELECT """
""" COORD1(CENTROID(Plane.position_bounds)) AS "RAJ2000", COORD2(CENTROID(Plane.position_bounds)) AS "DEJ... | python | def TAPQuery(RAdeg=180.0, DECdeg=0.0, width=1, height=1):
"""Do a query of the CADC Megacam table. Get all observations insize the box. Returns a file-like object"""
QUERY =( """ SELECT """
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OSSOS/MOP | src/ossos/utils/check_mkpsf.py | check_tags | def check_tags(my_expnum, ops_set, my_ccds, dry_run=True):
"""
check the tags for the given expnum/ccd set.
@param ops:
@param my_expnum:
@return:
"""
tags = storage.get_tags(my_expnum)
count = 0
outcount = 0
fails = []
for ccd in my_ccds:
success = True
count += ... | python | def check_tags(my_expnum, ops_set, my_ccds, dry_run=True):
"""
check the tags for the given expnum/ccd set.
@param ops:
@param my_expnum:
@return:
"""
tags = storage.get_tags(my_expnum)
count = 0
outcount = 0
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OSSOS/MOP | src/jjk/preproc/verifyDetection.py | get_flipped_ext | def get_flipped_ext(file_id,ccd):
"""Given a list of exposure numbers and CCD, get them from the DB"""
import MOPfits
import os, shutil
filename=MOPfits.adGet(file_id,extno=int(ccd))
if int(ccd)<18:
tfname=filename+"F"
shutil.move(filename, tfname)
os.system("imcopy %s[-*,... | python | def get_flipped_ext(file_id,ccd):
"""Given a list of exposure numbers and CCD, get them from the DB"""
import MOPfits
import os, shutil
filename=MOPfits.adGet(file_id,extno=int(ccd))
if int(ccd)<18:
tfname=filename+"F"
shutil.move(filename, tfname)
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OSSOS/MOP | src/jjk/preproc/verifyDetection.py | get_file_ids | def get_file_ids(object):
"""Get the exposure for a particular line in the meausre table"""
import MOPdbaccess
mysql = MOPdbaccess.connect('cfeps','cfhls',dbSystem='MYSQL')
cfeps=mysql.cursor()
sql="SELECT file_id FROM measure WHERE provisional LIKE %s"
cfeps.execute(sql,(object, ))
file_ids... | python | def get_file_ids(object):
"""Get the exposure for a particular line in the meausre table"""
import MOPdbaccess
mysql = MOPdbaccess.connect('cfeps','cfhls',dbSystem='MYSQL')
cfeps=mysql.cursor()
sql="SELECT file_id FROM measure WHERE provisional LIKE %s"
cfeps.execute(sql,(object, ))
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OSSOS/MOP | src/ossos/core/scripts/update_header.py | main | def main():
"""Do the script."""
parser = argparse.ArgumentParser(
description='replace image header')
parser.add_argument('--extname',
help='name of extension to in header')
parser.add_argument('expnum', type=str,
help='exposure to update')
pa... | python | def main():
"""Do the script."""
parser = argparse.ArgumentParser(
description='replace image header')
parser.add_argument('--extname',
help='name of extension to in header')
parser.add_argument('expnum', type=str,
help='exposure to update')
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OSSOS/MOP | src/ossos/core/ossos/planning/invariable.py | convert | def convert(lat, lon):
"""convert lat/lon from the ecliptic to the invariable plane."""
x = numpy.cos(lon) * numpy.cos(lat)
y = numpy.sin(lon) * numpy.cos(lat)
z = numpy.sin(lat)
# Invariable plane: values in arcseconds.
epsilon = 5713.86
omega = 387390.8
coseps = numpy.cos(epsilon * ... | python | def convert(lat, lon):
"""convert lat/lon from the ecliptic to the invariable plane."""
x = numpy.cos(lon) * numpy.cos(lat)
y = numpy.sin(lon) * numpy.cos(lat)
z = numpy.sin(lat)
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epsilon = 5713.86
omega = 387390.8
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OSSOS/MOP | src/jjk/preproc/s1.py | searchTriples | def searchTriples(expnums,ccd):
"""Given a list of exposure numbers, find all the KBOs in that set of exposures"""
import MOPfits,os
import MOPdbaccess
if len(expnums)!=3:
return(-1)
mysql=MOPdbaccess.connect('bucket','cfhls','MYSQL')
bucket=mysql.cursor()
### Some pro... | python | def searchTriples(expnums,ccd):
"""Given a list of exposure numbers, find all the KBOs in that set of exposures"""
import MOPfits,os
import MOPdbaccess
if len(expnums)!=3:
return(-1)
mysql=MOPdbaccess.connect('bucket','cfhls','MYSQL')
bucket=mysql.cursor()
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OSSOS/MOP | src/ossos/core/ossos/gui/errorhandling.py | DownloadErrorHandler.handle_error | def handle_error(self, error, download_request):
"""
Checks what error occured and looks for an appropriate solution.
Args:
error: Exception
The error that has occured.
download_request:
The request which resulted in the error.
"""
if ... | python | def handle_error(self, error, download_request):
"""
Checks what error occured and looks for an appropriate solution.
Args:
error: Exception
The error that has occured.
download_request:
The request which resulted in the error.
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OSSOS/MOP | src/ossos/core/ossos/gui/models/validation.py | ValidationModel.get_current_observation_date | def get_current_observation_date(self):
"""
Get the date of the current observation by looking in the header
of the observation for the DATE and EXPTIME keywords.
The 'DATE AT MIDDLE OF OBSERVATION' of the observation is returned
@return: Time
"""
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"""
Get the date of the current observation by looking in the header
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The 'DATE AT MIDDLE OF OBSERVATION' of the observation is returned
@return: Time
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OSSOS/MOP | src/ossos/utils/effunction.py | square | def square(m, eff_max,c,m0,sigma,m1=21):
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eff_max: Maximum of the efficiency function (peak efficiency)
c: shape of the drop-off in the efficiency at bright end
m0: transition to tappering at faint magnitudes
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"""
eff_max: Maximum of the efficiency function (peak efficiency)
c: shape of the drop-off in the efficiency at bright end
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OSSOS/MOP | src/ossos/utils/effunction.py | parse_square_param | def parse_square_param(line):
"""
Parse the line from the .eff file that contains the efficiency function
parameters for a 'square' function
line : the line containt the parameters, must start with 'square_param'
"""
if not line.startswith("square_param="):
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"""
Parse the line from the .eff file that contains the efficiency function
parameters for a 'square' function
line : the line containt the parameters, must start with 'square_param'
"""
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OSSOS/MOP | src/ossos/utils/effunction.py | parse_eff | def parse_eff(filename):
"""
Parse through Jean-Marcs OSSSO .eff files.
The efficiency files comes in 'chunks' meant to be used at different 'rates' of motion.
"""
blocks = []
block = {}
with open(filename) as efile:
for line in efile.readlines():
if line.lstrip().... | python | def parse_eff(filename):
"""
Parse through Jean-Marcs OSSSO .eff files.
The efficiency files comes in 'chunks' meant to be used at different 'rates' of motion.
"""
blocks = []
block = {}
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OSSOS/MOP | src/ossos/core/ossos/gui/config.py | read | def read(keypath, configfile=None):
"""
Reads a value from the configuration file.
Args:
keypath: str
Specifies the key for which the value is desired. It can be a
hierarchical path. Example: "section1.subsection.key1"
configfile: str
Path to the config file to read. ... | python | def read(keypath, configfile=None):
"""
Reads a value from the configuration file.
Args:
keypath: str
Specifies the key for which the value is desired. It can be a
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configfile: str
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OSSOS/MOP | src/ossos/core/ossos/ephem_target.py | EphemTarget._cdata_header | def _cdata_header(self, colsep="|"):
"""
Create a header for the CDATA section, as a visual guide.
"""
fields = self.fields
header_lines = []
line = ""
for fieldName in self.field_names:
width = int(fields[fieldName]['attr']['width'])
line ... | python | def _cdata_header(self, colsep="|"):
"""
Create a header for the CDATA section, as a visual guide.
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fields = self.fields
header_lines = []
line = ""
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OSSOS/MOP | src/ossos/core/ossos/ephem_target.py | EphemTarget._append_cdata | def _append_cdata(self, coordinate):
"""
Append an target location to the ephemeris listing.
"""
fields = self.fields
sra = coordinate.ra.to_string(units.hour, sep=':', precision=2, pad=True)
sdec = coordinate.dec.to_string(units.degree, sep=':', precision=1, alwayssign=T... | python | def _append_cdata(self, coordinate):
"""
Append an target location to the ephemeris listing.
"""
fields = self.fields
sra = coordinate.ra.to_string(units.hour, sep=':', precision=2, pad=True)
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OSSOS/MOP | src/ossos/core/ossos/ephem_target.py | EphemTarget.gemini_writer | def gemini_writer(self, f_handle):
"""
Write out a GEMINI formated OT ephemeris. This is just a hack of SSD Horizons output.
"""
f_handle.write(GEMINI_HEADER)
# Date__(UT)__HR:MN Date_________JDUT R.A.___(ICRF/J2000.0)___DEC dRA*cosD d(DEC)/dt
# 1 2 ... | python | def gemini_writer(self, f_handle):
"""
Write out a GEMINI formated OT ephemeris. This is just a hack of SSD Horizons output.
"""
f_handle.write(GEMINI_HEADER)
# Date__(UT)__HR:MN Date_________JDUT R.A.___(ICRF/J2000.0)___DEC dRA*cosD d(DEC)/dt
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OSSOS/MOP | src/ossos/utils/proc_status.py | mkpsf_failures | def mkpsf_failures():
"""A simple script to loop over the standard tags for the mkpsf and
step1 processing steps. If exposure/ccd combo isn't marked as
'success' then report the failure.
This example uses the vos client directly.
"""
for expnum in storage.list_dbimages():
for ccd i... | python | def mkpsf_failures():
"""A simple script to loop over the standard tags for the mkpsf and
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This example uses the vos client directly.
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OSSOS/MOP | src/jjk/preproc/search2.py | searchTriples | def searchTriples(expnums,ccd,plant=False):
"""Given a list of exposure numbers, find all the KBOs in that set of exposures"""
import MOPfits,os
import MOPdbaccess
if len(expnums)!=3:
raise TaskError, "got %d exposures"%(len(expnums))
### Some program Constants
proc_these_files=[... | python | def searchTriples(expnums,ccd,plant=False):
"""Given a list of exposure numbers, find all the KBOs in that set of exposures"""
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import MOPdbaccess
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Return the intersection between this frequency band and another.
Args:
other (FrequencyBand): the instance to intersect with
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>>> b1 = zounds.FrequencyBand(500, 1000)
>>> b2 = zo... | python | def intersect(self, other):
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Return the intersection between this frequency band and another.
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An iterable of all bands in this scale
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JohnVinyard/zounds | zounds/spectral/frequencyscale.py | FrequencyScale.Q | def Q(self):
"""
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"""
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JohnVinyard/zounds | zounds/spectral/frequencyscale.py | ChromaScale._hz_to_semitones | def _hz_to_semitones(self, hz):
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Convert hertz into a number of semitones above or below some reference
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"""
return np.log(hz / self._a440) / np.log(self._a) | python | def _hz_to_semitones(self, hz):
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OSSOS/MOP | src/jjk/preproc/cfhtCutout.py | resolve | def resolve(object):
"""Look up the name of a source using a resolver"""
import re
sesame_cmd = 'curl -s http://cdsweb.u-strasbg.fr/viz-bin/nph-sesame/-oI?'+string.replace(object,' ','')
f = os.popen(sesame_cmd)
lines = f.readlines()
f.close()
for line in lines:
if re.searc... | python | def resolve(object):
"""Look up the name of a source using a resolver"""
import re
sesame_cmd = 'curl -s http://cdsweb.u-strasbg.fr/viz-bin/nph-sesame/-oI?'+string.replace(object,' ','')
f = os.popen(sesame_cmd)
lines = f.readlines()
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OSSOS/MOP | src/ossos/core/ossos/planning/plotting/plot_fanciness.py | remove_border | def remove_border(axes=None, keep=('left', 'bottom'), remove=('right', 'top'), labelcol=ALMOST_BLACK):
"""
Minimize chart junk by stripping out unnecessary plot borders and axis ticks.
The top/right/left/bottom keywords toggle whether the corresponding plot border is drawn
"""
ax = axes or plt.gca()... | python | def remove_border(axes=None, keep=('left', 'bottom'), remove=('right', 'top'), labelcol=ALMOST_BLACK):
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OSSOS/MOP | src/jjk/preproc/demo.py | handle_exit_code | def handle_exit_code(d, code):
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1. For some boxes, unfortunately, dialog returns the code for
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OSSOS/MOP | src/jjk/preproc/demo.py | main | def main():
"""This demo shows the main features of the pythondialog Dialog class.
"""
try:
demo()
except dialog.error, exc_instance:
sys.stderr.write("Error:\n\n%s\n" % exc_instance.complete_message())
sys.exit(1)
sys.exit(0) | python | def main():
"""This demo shows the main features of the pythondialog Dialog class.
"""
try:
demo()
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OSSOS/MOP | src/jjk/preproc/s2.py | searchTriples | def searchTriples(expnums,ccd):
"""Given a list of exposure numbers, find all the KBOs in that set of exposures"""
import MOPfits,os
import MOPdbaccess
if len(expnums)!=3:
return(-1)
### Some program Constants
proc_file = open("proc-these-files","w")
proc_file.write("# Files... | python | def searchTriples(expnums,ccd):
"""Given a list of exposure numbers, find all the KBOs in that set of exposures"""
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import MOPdbaccess
if len(expnums)!=3:
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OSSOS/MOP | src/jjk/preproc/MOPconf.py | discands | def discands(record):
"""Display the candidates contained in a candidate record list"""
import pyfits
pyraf.iraf.images()
pyraf.iraf.images.tv()
display = pyraf.iraf.images.tv.display
width=128
cands = record['cands']
exps= record['fileId']
comments= record['comments']
... | python | def discands(record):
"""Display the candidates contained in a candidate record list"""
import pyfits
pyraf.iraf.images()
pyraf.iraf.images.tv()
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width=128
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OSSOS/MOP | src/ossos/core/ossos/planning/optimize_pointings.py | is_up | def is_up(coordinate, current_time):
"""
Given the position and time determin if the given target is up.
@param coordinate: the J2000 location of the source
@param current_time: The time of the observations
@return: True/False
"""
cfht.date = current_time.iso.replace('-', '/')
cfht.hori... | python | def is_up(coordinate, current_time):
"""
Given the position and time determin if the given target is up.
@param coordinate: the J2000 location of the source
@param current_time: The time of the observations
@return: True/False
"""
cfht.date = current_time.iso.replace('-', '/')
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OSSOS/MOP | src/jjk/www_scripts/TapQuery.py | TAPQuery | def TAPQuery(query):
"""The __main__ part of the script"""
tapURL = "http://cadc-ccda.hia-iha.nrc-cnrc.gc.ca/tap/sync"
## Some default parameters for that TAP service queries.
tapParams={'REQUEST': 'doQuery',
'LANG': 'ADQL',
'FORMAT': 'votable',
'QUERY... | python | def TAPQuery(query):
"""The __main__ part of the script"""
tapURL = "http://cadc-ccda.hia-iha.nrc-cnrc.gc.ca/tap/sync"
## Some default parameters for that TAP service queries.
tapParams={'REQUEST': 'doQuery',
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'FORMAT': 'votable',
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OSSOS/MOP | src/ossos/core/scripts/step1.py | step1 | def step1(expnum,
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wave_thresh=_WAVE_THRESHOLD,
maxcount=_MAX_COUNT,
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ccd: which ccd in the... | python | def step1(expnum,
ccd,
prefix='',
version='p',
sex_thresh=_SEX_THRESHOLD,
wave_thresh=_WAVE_THRESHOLD,
maxcount=_MAX_COUNT,
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sex_thresh: the detection threhold to run sExtractor at
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openstack/python-scciclient | scciclient/irmc/viom/elcm.py | VIOMTable.get_json | def get_json(self):
"""Create JSON data for AdapterConfig.
:returns: JSON data as follows:
{
"VIOMManage":{
},
"InitBoot":{
},
"UseVirtualAddresses":{
},
"BootMenuEnable":{
... | python | def get_json(self):
"""Create JSON data for AdapterConfig.
:returns: JSON data as follows:
{
"VIOMManage":{
},
"InitBoot":{
},
"UseVirtualAddresses":{
},
"BootMenuEnable":{
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openstack/python-scciclient | scciclient/irmc/viom/elcm.py | Slot.get_json | def get_json(self):
"""Create JSON data for slot.
:returns: JSON data for slot as follows:
{
"@SlotIdx":0,
"OnboardControllers":{
"OnboardController": [
]
},
"AddOnCards":{
... | python | def get_json(self):
"""Create JSON data for slot.
:returns: JSON data for slot as follows:
{
"@SlotIdx":0,
"OnboardControllers":{
"OnboardController": [
]
},
"AddOnCards":{
... | [
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openstack/python-scciclient | scciclient/irmc/viom/elcm.py | LANPort.get_json | def get_json(self):
"""Create JSON data for LANPort.
:returns: JSON data as follows:
{
"@PortIdx":1,
"PortEnable":{
},
"UseVirtualAddresses":{
},
"BootProtocol":{
},
"VirtualAddr... | python | def get_json(self):
"""Create JSON data for LANPort.
:returns: JSON data as follows:
{
"@PortIdx":1,
"PortEnable":{
},
"UseVirtualAddresses":{
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"BootProtocol":{
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openstack/python-scciclient | scciclient/irmc/viom/elcm.py | FCPort.get_json | def get_json(self):
"""Create FC port.
:returns: JSON for FC port as follows:
{
"@PortIdx":1,
"PortEnable":{
},
"UseVirtualAddresses":{
},
"VirtualAddress":{
"WWNN":{
... | python | def get_json(self):
"""Create FC port.
:returns: JSON for FC port as follows:
{
"@PortIdx":1,
"PortEnable":{
},
"UseVirtualAddresses":{
},
"VirtualAddress":{
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... | [
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... | [
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openstack/python-scciclient | scciclient/irmc/viom/elcm.py | CNAPort.get_json | def get_json(self):
"""Create JSON for CNA port.
:returns: JSON for CNA port as follows:
{
"@PortIdx":1,
"PortEnable":{
},
"Functions":{
}
}
"""
port = self.get_basic_json()
p... | python | def get_json(self):
"""Create JSON for CNA port.
:returns: JSON for CNA port as follows:
{
"@PortIdx":1,
"PortEnable":{
},
"Functions":{
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}
"""
port = self.get_basic_json()
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openstack/python-scciclient | scciclient/irmc/viom/elcm.py | FCBoot.get_json | def get_json(self):
"""Create JSON for FCBootEnvironment.
:returns: JSON for FCBootEnvironment as follows:
{
"FCBootEnvironment":{
"FCTargets":{
"FCTarget":[
]
},
"FC... | python | def get_json(self):
"""Create JSON for FCBootEnvironment.
:returns: JSON for FCBootEnvironment as follows:
{
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"FCTargets":{
"FCTarget":[
]
},
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... | [
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openstack/python-scciclient | scciclient/irmc/viom/elcm.py | ISCSIInitiator.get_json | def get_json(self):
"""Create JSON data for iSCSI initiator.
:returns: JSON data for iSCSI initiator as follows:
{
"DHCPUsage":{
},
"Name":{
},
"IPv4Address":{
},
"SubnetMask":{
... | python | def get_json(self):
"""Create JSON data for iSCSI initiator.
:returns: JSON data for iSCSI initiator as follows:
{
"DHCPUsage":{
},
"Name":{
},
"IPv4Address":{
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"SubnetMask":{
... | [
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openstack/python-scciclient | scciclient/irmc/viom/elcm.py | ISCSITarget.get_json | def get_json(self):
"""Create JSON data for iSCSI target.
:returns: JSON data for iSCSI target as follows:
{
"DHCPUsage":{
},
"Name":{
},
"IPv4Address":{
},
"PortNumber":{
... | python | def get_json(self):
"""Create JSON data for iSCSI target.
:returns: JSON data for iSCSI target as follows:
{
"DHCPUsage":{
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"Name":{
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"IPv4Address":{
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OSSOS/MOP | src/jjk/preproc/plot.py | zscale | def zscale(data,contrast,min=100,max=60000):
"""Scale the data cube into the range 0-255"""
## pic 100 random elements along each dimension
## use zscale (see the IRAF display man page or
## http://iraf.net/article.php/20051205162333315
import random
x=[]
for i in random.sample(xrange(data.shape[0]),50):
... | python | def zscale(data,contrast,min=100,max=60000):
"""Scale the data cube into the range 0-255"""
## pic 100 random elements along each dimension
## use zscale (see the IRAF display man page or
## http://iraf.net/article.php/20051205162333315
import random
x=[]
for i in random.sample(xrange(data.shape[0]),50):
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OSSOS/MOP | src/ossos/web/web/initiate/populate_ossuary.py | update_values | def update_values(ims, image_id, iq_zeropt=True, comment=False, snr=False, commdict=None):
"""
Update a row in ossuary with
:param ims: an ImageQuery, contains image table and a connector
:param image_id: the primary key of the row to be updated
:param iq_zeropt: Keyword set if iq and zeropoint are ... | python | def update_values(ims, image_id, iq_zeropt=True, comment=False, snr=False, commdict=None):
"""
Update a row in ossuary with
:param ims: an ImageQuery, contains image table and a connector
:param image_id: the primary key of the row to be updated
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